View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18577_low_1 (Length: 630)

Name: NF18577_low_1
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18577_low_1
NF18577_low_1
[»] chr4 (4 HSPs)
chr4 (10-357)||(51883210-51883564)
chr4 (473-615)||(51882876-51883018)
chr4 (134-230)||(6872072-6872168)
chr4 (10-109)||(6871925-6872023)
[»] chr5 (3 HSPs)
chr5 (10-230)||(32953909-32954148)
chr5 (10-91)||(29881094-29881175)
chr5 (134-198)||(29881232-29881296)
[»] chr1 (2 HSPs)
chr1 (119-230)||(36919248-36919359)
chr1 (10-62)||(36919125-36919177)
[»] chr8 (4 HSPs)
chr8 (134-228)||(3918315-3918409)
chr8 (134-228)||(3926574-3926668)
chr8 (10-91)||(3918466-3918547)
chr8 (10-91)||(3926725-3926806)
[»] scaffold0049 (2 HSPs)
scaffold0049 (134-230)||(1683-1779)
scaffold0049 (10-109)||(1816-1915)
[»] chr3 (5 HSPs)
chr3 (125-230)||(20312305-20312410)
chr3 (125-229)||(20286022-20286126)
chr3 (134-228)||(30035166-30035259)
chr3 (133-212)||(20334717-20334796)
chr3 (12-66)||(30035340-30035394)
[»] scaffold0652 (2 HSPs)
scaffold0652 (134-216)||(7248-7330)
scaffold0652 (10-55)||(7391-7436)
[»] chr2 (2 HSPs)
chr2 (266-319)||(25648682-25648736)
chr2 (256-299)||(18751410-18751454)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 51883564 - 51883210
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaacaactgttacaaaactgcaaatgtaaggaaaatt 109  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  51883564 catcatcccaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaataaccgttacaaaactgcaaatgtaaggaaaatt 51883465  T
Q  110 gacatctccaaaaaatca--------cttaccactccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcat 201  Q
    ||||||||||||||||||        ||||||| || ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |    
T  51883464 gacatctccaaaaaatcaaaaaatcacttaccattctagaaaatcggcatctccaaaactttcgcttaggattttcatctgtatttgaaatccacatctt 51883365  T
Q  202 cataaccttctcacaaccacagattggtgacatgtttccagtcagatacagacaattgattgtaggggataaaccaaagaatctttatattacaagtgag 301  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||    
T  51883364 cataaccttctcacaaccgcagattggtgacatgtttccagtcagatacagacagttggctctaggggataaaccaaagaatctttatattacaagtgag 51883265  T
Q  302 -atttacaatttgttttttccgggtaaaccaaaagacccccaaatgacaatggataa 357  Q
     ||||||||||  ||||||   |||||||||| |||||| |||||| ||| ||||||    
T  51883264 aatttacaatt--tttttttgaggtaaaccaatagaccctcaaatggcaagggataa 51883210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 473 - 615
Target Start/End: Complemental strand, 51883018 - 51882876
Alignment:
Q  473 gtcatattgaaggcacgttttatcatttccttaaattaaattaagtacatgtaattaaactctcgttgaaatatcactttttcttcttcctttgtgtttc 572  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51883018 gtcatattgaaggcacgtgttatcatttccttaaattaaattaagtacatgtaattaaactctcgttgaaatatcactttttcttcttcctttgtgtttc 51882919  T
Q  573 gtgttgaagcgttggccgcgatcctcgttagtatctagactat 615  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  51882918 gtgttgaagcgttggccgcgatcctcgttagtatctagactat 51882876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6872072 - 6872168
Alignment:
Q  134 actccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaaccacagattggtg 230  Q
    |||||||||||| | |||||| ||||||||| ||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  6872072 actccagaaaatcgacatctccaaaactttctcttgggattttcatctgtgtttgaaatccacatcttcataaccttctcacaaccgcagattggtg 6872168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 6871925 - 6872023
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaacaactgttacaaaactgcaaatgtaaggaaaatt 109  Q
    ||||||| ||||||||||  || |||||||||||||||| ||||||||| ||  ||||| ||| | ||||| |||| |||||||| ||||||| ||||||    
T  6871925 catcatcccaaatgaacagctcgcaactatactcagcctacaataagttccaagttataggtttaccaactattac-aaactgcagatgtaagcaaaatt 6872023  T

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Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 32954148 - 32953909
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaacaactgttacaaaactgcaaatgtaaggaaa--- 106  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| || || | ||||| ||||||||||||| |||||||||||       
T  32954148 catcatcccaaatgaacaactcacaactatactcagcctgcaataagtttcggcttacaaatttagcaactattacaaaactgcatatgtaaggaaaatt 32954049  T
Q  107 -----------attgacatctcc--------aaaaaatcacttaccactccagaaaattggcatctctaaaactttcgcttaggattttcatttgtattt 187  Q
               ||| ||||||||        ||||| ||||||||   ||||||||||||||||||  | ||||||| ||| |||||||||| ||| |||    
T  32954048 tgaaacacaacatttacatctccagaaaaataaaaattcacttac---tccagaaaattggcatcttcagaactttctcttgggattttcatctgtgttt 32953952  T
Q  188 gaaatccacatcatcataaccttctcacaaccacagattggtg 230  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  32953951 gaaatccacatcttcataaccttctcacaaccacatattggtg 32953909  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 29881094 - 29881175
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaacaactgttacaaaact 91  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| || || | ||||| || |||||||    
T  29881094 catcatcccaaatgaacagctcacaactatactcagcctgcaataagtttcggcttacaaatttagcaactatttcaaaact 29881175  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 29881232 - 29881296
Alignment:
Q  134 actccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacat 198  Q
    |||||||||||| |||||||| ||||||||| ||| || ||||||||||| ||||||||||||||    
T  29881232 actccagaaaatcggcatctccaaaactttctcttggggttttcatttgtgtttgaaatccacat 29881296  T

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Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 36919248 - 36919359
Alignment:
Q  119 aaaaaatcacttaccactccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaac 218  Q
    ||||| |||||||||||| || ||||| |||||||| ||||||||| |||  ||||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  36919248 aaaaattcacttaccactgcaaaaaatcggcatctccaaaactttctcttgtgattttcatctgtgtttgaaatccacatcttcataaccttctcacaac 36919347  T
Q  219 cacagattggtg 230  Q
    | || |||||||    
T  36919348 cgcatattggtg 36919359  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 36919125 - 36919177
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcag 62  Q
    ||||||| ||||||||||| ||||||||||||||||||||  |||||||||||    
T  36919125 catcatcccaaatgaacaactcacaactatactcagcctgttataagtttcag 36919177  T

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Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 3918409 - 3918315
Alignment:
Q  134 actccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaaccacagattgg 228  Q
    |||||||||||| |||||||| ||||||||| ||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||| || |||||    
T  3918409 actccagaaaatcggcatctccaaaactttctcttgggattttcatctgtgtttgaaatccacatcttcataaccttctcacaaccgcatattgg 3918315  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 3926668 - 3926574
Alignment:
Q  134 actccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaaccacagattgg 228  Q
    |||||||||||| |||||||| ||||||||| ||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||| || |||||    
T  3926668 actccagaaaatcggcatctccaaaactttctcttgggattttcatctgtgtttgaaatccacatcttcataaccttctcacaaccgcatattgg 3926574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 3918547 - 3918466
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaacaactgttacaaaact 91  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| || || | ||||| || |||||||    
T  3918547 catcatcccaaatgaacagctcacaactatactcagcctgcaataagtttcggcttacaaatttagcaactatttcaaaact 3918466  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 3926806 - 3926725
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaacaactgttacaaaact 91  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||| || || | ||||| || |||||||    
T  3926806 catcatcccaaatgaacagctcacaactatactcagcctgcaataagtttcggcttacaaatttagcaactatttcaaaact 3926725  T

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Target: scaffold0049 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 1779 - 1683
Alignment:
Q  134 actccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaaccacagattggtg 230  Q
    |||||||||||| | |||||| ||||||||| ||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||| || |||||||    
T  1779 actccagaaaatcgacatctccaaaactttctcttgggattttcatctgtgtttgaaatccacatcttcataaccttctcacaaccgcatattggtg 1683  T

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Target: scaffold0049; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 1915 - 1816
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagcttataagttcaacaactgttacaaaactgcaaatgtaaggaaaatt 109  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||| |||| ||||| || || | ||||| || ||||||| || | ||||||||||||    
T  1915 catcatcccaaatgaacagctcacaactatactcagcctgcaataattttcggcttacaaatttagcaactatttcaaaactacatacgtaaggaaaatt 1816  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 20312410 - 20312305
Alignment:
Q  125 tcacttaccactccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaaccacaga 224  Q
    ||||||||||||||| ||||| | ||||| |||||||||| ||| ||||||||| |||| |||||||| |||||| |||||||||||| ||||| ||| |    
T  20312410 tcacttaccactccataaaatcgacatctttaaaactttctcttcggattttcagttgtgtttgaaatacacatcttcataaccttctaacaactacaaa 20312311  T
Q  225 ttggtg 230  Q
    ||||||    
T  20312310 ttggtg 20312305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 20286126 - 20286022
Alignment:
Q  125 tcacttaccactccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaaccacaga 224  Q
    |||||||| |||||| ||||| | |||||| || |||||| ||| ||||||||| |||| ||||||||||||||| |||||||||||| ||||| |||||    
T  20286126 tcacttacaactccataaaatcgacatctccaacactttctctttggattttcagttgtgtttgaaatccacatcttcataaccttctgacaactacaga 20286027  T
Q  225 ttggt 229  Q
    |||||    
T  20286026 ttggt 20286022  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 30035259 - 30035166
Alignment:
Q  134 actccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcacaaccacagattgg 228  Q
    |||||||||||| |||||||| ||||||||| ||| |||||||||| ||| || |||||||||||| ||||||||||||||||||| || |||||    
T  30035259 actccagaaaatcggcatctccaaaactttctcttgggattttcatctgtgtt-gaaatccacatcttcataaccttctcacaaccgcatattgg 30035166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 20334796 - 20334717
Alignment:
Q  133 cactccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttct 212  Q
    ||||||| ||||| | |||||||||||||||| ||| ||||||||| |||| |||||||| |||||| ||||||||||||    
T  20334796 cactccataaaatcgacatctctaaaactttctcttcggattttcagttgtgtttgaaatacacatcttcataaccttct 20334717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 30035394 - 30035340
Alignment:
Q  12 tcatcacaaatgaacaattcacaactatactcagcctgcaataagtttcagctta 66  Q
    ||||| ||||||||||  |||||||||||||||||||||||||| |||| |||||    
T  30035394 tcatcccaaatgaacagctcacaactatactcagcctgcaataattttcggctta 30035340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 7330 - 7248
Alignment:
Q  134 actccagaaaattggcatctctaaaactttcgcttaggattttcatttgtatttgaaatccacatcatcataaccttctcaca 216  Q
    ||||||||||||  ||||||| ||||||||| ||| |||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  7330 actccagaaaatcagcatctccaaaactttctcttgggattttcatctgtgtttgaaatccacatcttcataaccttctcaca 7248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 7436 - 7391
Alignment:
Q  10 catcatcacaaatgaacaattcacaactatactcagcctgcaataa 55  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||    
T  7436 catcatcccaaatgaacagctcacaactatactcagcctgcaataa 7391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 25648736 - 25648682
Alignment:
Q  266 ggggataaaccaaagaatctttatattacaagtgag-atttacaatttgtttttt 319  Q
    |||| |||||||| |||||||||||||||||||||| || |||||||| ||||||    
T  25648736 gggggtaaaccaaggaatctttatattacaagtgagaatctacaatttttttttt 25648682  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 18751410 - 18751454
Alignment:
Q  256 attgattgt-aggggataaaccaaagaatctttatattacaagtg 299  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  18751410 attgattgtgagggggtaaaccaaggaatctttatattacaagtg 18751454  T

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