View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18577_low_13 (Length: 309)

Name: NF18577_low_13
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18577_low_13
NF18577_low_13
[»] chr4 (12 HSPs)
chr4 (13-287)||(3671640-3671915)
chr4 (67-227)||(55635535-55635696)
chr4 (67-227)||(54861868-54862028)
chr4 (71-227)||(55665264-55665423)
chr4 (76-227)||(54627314-54627465)
chr4 (71-167)||(52985562-52985658)
chr4 (64-227)||(55659042-55659208)
chr4 (67-209)||(50191742-50191884)
chr4 (229-272)||(55635403-55635446)
chr4 (13-62)||(54861725-54861774)
chr4 (241-273)||(54627184-54627216)
chr4 (240-272)||(54862124-54862156)
[»] chr8 (3 HSPs)
chr8 (64-231)||(9889810-9889977)
chr8 (229-291)||(9889669-9889731)
chr8 (13-64)||(9890056-9890107)
[»] chr2 (2 HSPs)
chr2 (67-227)||(13401715-13401875)
chr2 (13-62)||(13401970-13402019)
[»] chr1 (2 HSPs)
chr1 (110-186)||(37310524-37310600)
chr1 (110-165)||(22514483-22514538)
[»] chr7 (1 HSPs)
chr7 (111-186)||(46154649-46154724)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 3671640 - 3671915
Alignment:
Q  13 aatatttcccaatgtgcgaagtgcaggaatcaccactgaaggagatgggttcaaaaggagctccaccagtctgccacatacacctgcctcgatcaccgct 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  3671640 aatatttcccaatgtgcggagtgcaggaatcaccactgaaggagatgggttcgaaaggagctccaccagtctgccacaaacacctgcctcgatcaccgct 3671739  T
Q  113 tggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctgccaggacttcttgatcattgg-aaaaaatcaaacgctcgagagtg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3671740 tggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctgccatgacttcttgatcattggaaaaaaatcaaacgctcgagagtg 3671839  T
Q  212 ggaagtgctggcctcaactgctcaaacaggggttgtggtttgcccctgcaaaagtttgacagggttcgcgttgcaa 287  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3671840 ggaagtgctggcgtcaactgctcaaacaggggttgtggtttgcccatgcaaaagtttgacagggttcgcgttgcaa 3671915  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 55635696 - 55635535
Alignment:
Q  67 aaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagat-atgagagtgcccagcatgcatc 165  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||  |||||||||||| || ||||||||||||||||||||||    
T  55635696 aaggagctccaccagtctgccacatacacctgcgttgatcactgcttggattttgtcattcattccatcagaaatattatgagagtgcccagcatgcatc 55635597  T
Q  166 tgccaggacttcttgatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctca 227  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55635596 tgacaggacttcttcatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctca 55635535  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 54861868 - 54862028
Alignment:
Q  67 aaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatct 166  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||     
T  54861868 aaggagctgcaccagtctgccacatacacctgcctcgatcaccgcttggatattgtcatttgttccatcagaaagatacgagagtgcccaccatgcatcg 54861967  T
Q  167 gccaggacttcttgatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctca 227  Q
    |  ||||||||||  || |||||||||| |||| ||| ||||| |||||| ||||||||||    
T  54861968 gttaggacttcttcgtctttggaaaaaaccaaatgcttgagagcgggaagcgctggcctca 54862028  T

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Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 55665264 - 55665423
Alignment:
Q  71 agctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctgcca 170  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||   ||    
T  55665264 agctccaccagtctgccacatacacctgcctcgatcacagcttggattttgtcatttgttccatcagaaagatatgagaatgcccaacatgcatcactca 55665363  T
Q  171 ggacttcttga---tcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctca 227  Q
    ||||||||| |   |||||||| |||||||||||||| |||| ||| || ||||||||||    
T  55665364 ggacttcttcatcgtcattggacaaaatcaaacgctcaagagagggcagcgctggcctca 55665423  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 54627465 - 54627314
Alignment:
Q  76 caccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctgccaggact 175  Q
    ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||| || | ||||||     
T  54627465 caccagtctaccacatacacctgcctcgatcaccgcttggatattatcacttgttccatcagaaagatacgagagtgcccaacatgcctcggtcaggacg 54627366  T
Q  176 tcttgatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctca 227  Q
     ||| ||| |||||||||| ||||| || ||||| |||||| |||| |||||    
T  54627365 acttcatctttggaaaaaaccaaacacttgagagcgggaagcgctgacctca 54627314  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 52985562 - 52985658
Alignment:
Q  71 agctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctg 167  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  52985562 agctccaccagtctgccacatatacctgcctcaatcacctcttggattatgtcatttgttccatcagaaagatatgagattgcccaacatgcatctg 52985658  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 55659042 - 55659208
Alignment:
Q  64 caaaaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatc---agaaagatatgagagtgcccagcat 160  Q
    |||||||||||| || |||||  ||||||  || |||||||| ||||||||||||| ||||||||  ||||    |||||||||||||||||||||||||    
T  55659042 caaaaggagctctactagtctatcacatatgccagcctcgattaccgcttggatttcgtcatttgaaccatatttagaaagatatgagagtgcccagcat 55659141  T
Q  161 gcatctgccaggacttcttgatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctca 227  Q
    || |||| || |||||||| ||||||||||||||||||||||  ||| || ||||||||| ||||||    
T  55659142 gcttctgtcacgacttcttcatcattggaaaaaatcaaacgcctgagggtaggaagtgcttgcctca 55659208  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 50191742 - 50191884
Alignment:
Q  67 aaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatct 166  Q
    |||||||| ||||| || ||||||||||||||| || || |   ||||||||||||||||||| |||||||| || ||||| |  |||||||| ||||||    
T  50191742 aaggagctgcaccaatcggccacatacacctgcgtcaataatttcttggattttgtcatttgtgccatcagataggtatgataaagcccagcaggcatct 50191841  T
Q  167 gccaggacttcttgatcattggaaaaaatcaaacgctcgagag 209  Q
    | ||| ||||||| ||| |  || |||||||||||||| ||||    
T  50191842 gtcagaacttcttcatcctccgacaaaatcaaacgctcaagag 50191884  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 55635446 - 55635403
Alignment:
Q  229 ctgctcaaacaggggttgtggtttgcccctgcaaaagtttgaca 272  Q
    ||||||||| ||||||||||| || |||||||||||||||||||    
T  55635446 ctgctcaaataggggttgtggctttcccctgcaaaagtttgaca 55635403  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 54861725 - 54861774
Alignment:
Q  13 aatatttcccaatgtgcgaagtgcaggaatcaccactgaaggagatgggt 62  Q
    ||||||||||| ||||||||   ||||||||| |||||||||||||||||    
T  54861725 aatatttcccattgtgcgaacgacaggaatcagcactgaaggagatgggt 54861774  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 54627216 - 54627184
Alignment:
Q  241 gggttgtggtttgcccctgcaaaagtttgacag 273  Q
    ||||||||| |||||||||||||||||||||||    
T  54627216 gggttgtggcttgcccctgcaaaagtttgacag 54627184  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 54862124 - 54862156
Alignment:
Q  240 ggggttgtggtttgcccctgcaaaagtttgaca 272  Q
    |||||||||| ||||||||||||||||||||||    
T  54862124 ggggttgtggcttgcccctgcaaaagtttgaca 54862156  T

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Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 64 - 231
Target Start/End: Complemental strand, 9889977 - 9889810
Alignment:
Q  64 caaaaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgca 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889977 caaaaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgca 9889878  T
Q  164 tctgccaggacttcttgatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctcaactg 231  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9889877 tctgccaggacttcttcatcattggaaaaaatcaaaagctcgagagtgggaagtgctggcctcaactg 9889810  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 9889731 - 9889669
Alignment:
Q  229 ctgctcaaacaggggttgtggtttgcccctgcaaaagtttgacagggttcgcgttgcaattct 291  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  9889731 ctgctcaaacaggggttgcggtttgcccctacaaaagtttgacagggttcgcgttgcaattct 9889669  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 9890107 - 9890056
Alignment:
Q  13 aatatttcccaatgtgcgaagtgcaggaatcaccactgaaggagatgggttc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9890107 aatatttcccaatgtgcgaagtgcaggaatcaccactgaaggagaagggttc 9890056  T

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Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 13401875 - 13401715
Alignment:
Q  67 aaggagctccaccagtctgccacatacacctgcctcgatcaccgcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatct 166  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13401875 aaggagctgcactagtctgccacatacacctgcctcaatcaccgcttggattttgtcatttgttccatcagaaagataagagagtgcccagcatgcatct 13401776  T
Q  167 gccaggacttcttgatcattggaaaaaatcaaacgctcgagagtgggaagtgctggcctca 227  Q
    | ||||||||||| |||||| ||||||| ||||||||| ||||  ||||||||||||||||    
T  13401775 gtcaggacttcttcatcatttgaaaaaaccaaacgctcaagagccggaagtgctggcctca 13401715  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 13402019 - 13401970
Alignment:
Q  13 aatatttcccaatgtgcgaagtgcaggaatcaccactgaaggagatgggt 62  Q
    |||||||||||  |||||||||||||| |||| |||||||||||||||||    
T  13402019 aatatttcccaccgtgcgaagtgcagggatcagcactgaaggagatgggt 13401970  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 37310524 - 37310600
Alignment:
Q  110 gcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctgccaggacttcttgatcatt 186  Q
    ||||| ||||| || ||||| ||||||||||||||||| ||||||||||| ||||| | || |||||||| ||||||    
T  37310524 gcttgaattttatcgtttgtaccatcagaaagatatgatagtgcccagcaggcatcagtcaagacttcttcatcatt 37310600  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 22514483 - 22514538
Alignment:
Q  110 gcttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatc 165  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| |||||    
T  22514483 gcttgaattttttcatttgtaccatcagaaagatatgatagtgcccagcaggcatc 22514538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 46154649 - 46154724
Alignment:
Q  111 cttggattttgtcatttgttccatcagaaagatatgagagtgcccagcatgcatctgccaggacttcttgatcatt 186  Q
    |||| |||||||||||||  ||||||||||||||||| |||||||| || ||||| | || |||||||| ||||||    
T  46154649 cttgaattttgtcatttgcaccatcagaaagatatgaaagtgcccaacaggcatcagtcaagacttcttcatcatt 46154724  T

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