View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18577_low_14 (Length: 296)

Name: NF18577_low_14
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18577_low_14
NF18577_low_14
[»] chr4 (7 HSPs)
chr4 (13-279)||(3677892-3678158)
chr4 (89-237)||(16933666-16933814)
chr4 (89-237)||(22134135-22134283)
chr4 (171-237)||(52094919-52094985)
chr4 (194-237)||(11008191-11008234)
chr4 (168-237)||(5872360-5872429)
chr4 (79-183)||(26558308-26558412)
[»] chr8 (7 HSPs)
chr8 (89-237)||(18811376-18811524)
chr8 (89-237)||(34255981-34256129)
chr8 (168-237)||(31577890-31577959)
chr8 (168-236)||(13985420-13985488)
chr8 (89-237)||(27827653-27827801)
chr8 (89-237)||(43080270-43080418)
chr8 (89-237)||(5591431-5591578)
[»] chr7 (7 HSPs)
chr7 (89-237)||(1048807-1048955)
chr7 (136-236)||(13290064-13290164)
chr7 (89-237)||(38394608-38394756)
chr7 (82-237)||(47675605-47675760)
chr7 (89-237)||(36072-36220)
chr7 (89-237)||(7093979-7094127)
chr7 (89-237)||(44725197-44725345)
[»] chr3 (6 HSPs)
chr3 (89-237)||(11168693-11168841)
chr3 (89-237)||(37407234-37407382)
chr3 (89-237)||(10957841-10957989)
chr3 (89-237)||(5259797-5259945)
chr3 (89-237)||(6717058-6717206)
chr3 (89-237)||(22834483-22834630)
[»] chr2 (2 HSPs)
chr2 (89-237)||(19503854-19504002)
chr2 (89-237)||(36560659-36560807)
[»] scaffold0016 (1 HSPs)
scaffold0016 (168-237)||(115148-115217)
[»] chr6 (3 HSPs)
chr6 (89-237)||(26067913-26068061)
chr6 (168-237)||(3631540-3631609)
chr6 (89-237)||(33309502-33309650)
[»] chr1 (2 HSPs)
chr1 (89-237)||(51750650-51750798)
chr1 (196-237)||(13127360-13127401)
[»] scaffold1899 (1 HSPs)
scaffold1899 (89-237)||(237-385)
[»] chr5 (2 HSPs)
chr5 (89-237)||(26171312-26171460)
chr5 (89-233)||(29720924-29721068)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 3678158 - 3677892
Alignment:
Q  13 aatatctctatagttttcgactctaccatcctaaatgagtagagttgttttatgaatgctctaggtaaggatttgctcatatacaacgactccagccttg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3678158 aatatctctatagttttcgactctaccatcctaaatgagtagagttgttttatgaatgttctaggtaaggatttggtcatatacaacgactccagccttg 3678059  T
Q  113 cccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaacttatatccttgtccaccatctcaat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  3678058 cccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaacttatatccttgtccaccatctcggt 3677959  T
Q  213 tttcttcgcttgtgacatggtgaccaacaacacaatctctttcttcaaaacttttgcacacttttgt 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  3677958 tttcttcgcttgtgacatggtgaccaacaacacaacctctttcttcaaagcttttgcacacttttgt 3677892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 16933666 - 16933814
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  16933666 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 16933765  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||||||||||||||||||    
T  16933766 cctggccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 16933814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 22134135 - 22134283
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    ||||||| || || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  22134135 tcatataaaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 22134234  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  |||||| |||||||||||||||||||    
T  22134235 cctggccttgtccaccatctcggttttctccgcttgtgacatggtgacc 22134283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 52094919 - 52094985
Alignment:
Q  171 gcacaatacaatgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    |||||| ||||||| ||| ||| ||||||||||||||||  | |||| |||||||||||||||||||    
T  52094919 gcacaagacaatgacactcatagccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 52094985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 11008191 - 11008234
Alignment:
Q  194 ccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    ||||||||||||||||| | |||| |||||||||||||||||||    
T  11008191 ccttgtccaccatctcagtcttctccgcttgtgacatggtgacc 11008234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 5872429 - 5872360
Alignment:
Q  168 gaggcacaatacaatgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    ||||||||| ||||||  ||| ||| ||||||||||||||||  | |||| |||||||| ||||||||||    
T  5872429 gaggcacaagacaatggcactcatagccttgtccaccatctcggtcttctccgcttgtgtcatggtgacc 5872360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 26558412 - 26558308
Alignment:
Q  79 aaggatttgctcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaata 178  Q
    |||||| || |||||||||||||||||| | ||| ||| |||   ||||||||||  |||| |||||||||  | | |||| |||||| ||||||||| |    
T  26558412 aaggatatggtcatatacaacgactccaactttgaccatatccatgccgcggttggttcctttgcgacatcccttaaaactttatcctcgaggcacaaga 26558313  T
Q  179 caatg 183  Q
    |||||    
T  26558312 caatg 26558308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 18811524 - 18811376
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||| |||    
T  18811524 tcatatacaaagattccatctttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatgacact 18811425  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
         ||||||||||||||||  | |||| |||||||||||||||||||    
T  18811424 ccaggccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 18811376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 34255981 - 34256129
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||||||||||| | ||| ||| ||||  |  |||||||  ||||  ||||||||  ||| |||| | |||  ||||||||| ||||||  |||    
T  34255981 tcatatacaacgactccaactttgaccacatcgatgttgcggttggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatggcact 34256080  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
     ||| ||||||||||||||||  | |||| |||||||||||||||||||    
T  34256081 catagccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 34256129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 31577890 - 31577959
Alignment:
Q  168 gaggcacaatacaatgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    ||||||||| ||||||| |||| |  |||||||||||||||| || |||| | |||||||||||||||||    
T  31577890 gaggcacaagacaatgacacttctggccttgtccaccatctcgatcttctcctcttgtgacatggtgacc 31577959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 13985420 - 13985488
Alignment:
Q  168 gaggcacaatacaatgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtgac 236  Q
    ||||||||| ||||||| |||  || ||||||||||||||||  | |||| ||||||||||||||||||    
T  13985420 gaggcacaagacaatgacactcttagccttgtccaccatctcggtcttctccgcttgtgacatggtgac 13985488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 27827801 - 27827653
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  27827801 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 27827702  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      || ||||||||||||||||  | |||| | |||||||||||| ||||    
T  27827701 cctagccttgtccaccatctcggtcttctccacttgtgacatggcgacc 27827653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 43080418 - 43080270
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| ||||   ||||||||| ||||||  |||    
T  43080418 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatctccgaggcacaagacaatggcact 43080319  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||||||||||||||||||    
T  43080318 cctggccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 43080270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 5591578 - 5591431
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| ||||||| | ||| ||| |||| |||||||||||  ||||  ||||||||  ||| |||| ||||   ||||||||| ||||||  |||    
T  5591578 tcatatacaatgactccaactttgaccacatcgacgccgcggttggttccttcgcgacatccctcaaaactttatcaccgaggcacaagacaatggcact 5591479  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      || || |||||||||||||  | |||| |||||||| ||||||||||    
T  5591478 cctagcc-tgtccaccatctcggtcttctccgcttgtgtcatggtgacc 5591431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 1048807 - 1048955
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  1048807 tcatatacaaagattccaactttgcccatatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 1048906  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||||||||||||||||||    
T  1048907 cctgaccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 1048955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 13290064 - 13290164
Alignment:
Q  136 tcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtga 235  Q
    |||| ||| |||||| ||| |||| |||||  ||||||||| ||||||| |||| |  ||||||||||||||||  | |||| |||||||||||||||||    
T  13290064 tcctttgctacatctctcaaaactttatccctgaggcacaagacaatgacacttctggccttgtccaccatctcggtcttctccgcttgtgacatggtga 13290163  T
Q  236 c 236  Q
    |    
T  13290164 c 13290164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 38394756 - 38394608
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  38394756 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 38394657  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||||||||||||||||||    
T  38394656 cctggccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 38394608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 237
Target Start/End: Original strand, 47675605 - 47675760
Alignment:
Q  82 gatttgctcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaa 181  Q
    |||||| |||||||||| ||||| | | ||| ||| |||| ||||||||| |  |||| |||||||||  ||| |||| | ||   ||||||||||||||    
T  47675605 gatttggtcatatacaatgactcaaactttgaccacatcgacgccgcggtaggttcctttgcgacatccctcaaaactttgtcaccgaggcacaatacaa 47675704  T
Q  182 tgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    ||  |||  || ||||||||||||||||  | |||| |||||||| ||||||||||    
T  47675705 tggcactcctagccttgtccaccatctcggtcttctacgcttgtgtcatggtgacc 47675760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 36220 - 36072
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  |||||||| |  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  36220 tcatatacaaagattccaactttgcccacatcgatgccgcggtagcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 36121  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||||||||||||||||||    
T  36120 cctggccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 36072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 7093979 - 7094127
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| ||||||| | ||||||| ||||  | ||||||||  |||| ||| || ||| ||| |||| |||||   ||||| || ||||||| |||    
T  7093979 tcatatacaaagactccaactttgcccacatcgatgtcgcggttgcttcctttgctacttctctcaaaactttatccccaaggcataagacaatgacact 7094078  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||| ||||||||||||||    
T  7094079 cctgaccttgtccaccatctcggtcttctccgctcgtgacatggtgacc 7094127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 44725345 - 44725197
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  44725345 tcatatacaaagattccaactttgcccaaatcgatgccgcggttggttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 44725246  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||| ||  | |||| | |||||||||||||||||    
T  44725245 cctgaccttgtccaccatgtcggtcttctccacttgtgacatggtgacc 44725197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 11168841 - 11168693
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  || |||||||  |||||||| || | | ||| |||| |||||  ||||||||| ||||||  |||    
T  11168841 tcatatacaaagattccaactttgcccacatcgatgctgcggttgcttcctctgctacttatctcaaaactttatccccgaggcacaagacaatggcact 11168742  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      || ||||||||||||||||  | |||| |||||||||||||||||||    
T  11168741 cctagccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 11168693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 37407382 - 37407234
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||||||||||| | ||| ||| || |  ||||||||||  ||||  ||||||||  ||| |||| | |||  ||||||||| ||||||  |||    
T  37407382 tcatatacaacgactccaactttgaccacattgatgccgcggttggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatggcact 37407283  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      || ||||||||||||||||  | |||| |||||||||||||||||||    
T  37407282 cctagccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 37407234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 10957841 - 10957989
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||| ||||||  |||| ||| || ||| ||| |||| |||||| ||||||||| |||||| ||||    
T  10957841 tcatatacaaagattccaactttgcccaaatcgatgccacggttggttcctttgctacttctctcaaaactttatcctcgaggcacaagacaatggaact 10957940  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||| ||||||||  | |||| |||| ||||||||||||||    
T  10957941 cctggccttgtctaccatctcggtcttctccgctcgtgacatggtgacc 10957989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 5259797 - 5259945
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||||||||||| | ||| ||| || |  ||||||||||  ||||  ||||||||  | | |||| | |||| ||||||||| ||||||  |||    
T  5259797 tcatatacaacgactccaactttgaccacatagatgccgcggttggttccttcgcgacatcccttaaaactttttcctcgaggcacaagacaatggcact 5259896  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      || || |||||||||||||  | |||| | |||||||||||||||||    
T  5259897 cctagccatgtccaccatctcggtcttctccacttgtgacatggtgacc 5259945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 6717206 - 6717058
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    ||||||||||||| |||| | | | ||| ||||  ||||||||||  ||||  ||||||||  ||| |||| |||||  ||||||||| ||||||  |||    
T  6717206 tcatatacaacgattccaacttagaccatatcgatgccgcggttggttccttcgcgacatccctcaaaactttatccccgaggcacaagacaatggcact 6717107  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| | |||||||||||||||||    
T  6717106 cctcgccttgtccaccatctcggtcttctcctcttgtgacatggtgacc 6717058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 22834483 - 22834630
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| ||||||| | ||| ||| |||| |||||||||||  ||||  ||||||||  ||| |||| ||||   ||||||||| ||||||  |||    
T  22834483 tcatatacaatgactccaactttgaccacatcgacgccgcggttggttccttcgcgacatccctcaaaactttatcaccgaggcacaagacaatggcact 22834582  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      || || |||||||||||||  | |||| |||||||| ||||||||||    
T  22834583 cctagcc-tgtccaccatctcggtcttctccgcttgtgtcatggtgacc 22834630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 19503854 - 19504002
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  19503854 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 19503953  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||||||||||||||||||    
T  19503954 cctggccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 19504002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 36560659 - 36560807
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  36560659 tcatatacaaagattccaactttgcccatatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 36560758  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||||||||||||||||||    
T  36560759 cctggccttgtccaccatctcggtcttctccgcttgtgacatggtgacc 36560807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 115217 - 115148
Alignment:
Q  168 gaggcacaatacaatgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    ||||||||| ||||||  |||  || ||||||||||||||||| | ||||||||||||| ||||||||||    
T  115217 gaggcacaagacaatggcactcctagccttgtccaccatctcagtcttcttcgcttgtgtcatggtgacc 115148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 26067913 - 26068061
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| |||| || |||    
T  26067913 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctatcaaaactttatccccgaggcacaagacaacgacact 26068012  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||| ||||||||||||||    
T  26068013 cctggccttgtccaccatctcggtcttctccgctcgtgacatggtgacc 26068061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 3631540 - 3631609
Alignment:
Q  168 gaggcacaatacaatgaaacttatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    ||||||||| ||||||| |||  |  ||||||||||||||||| | |||| |||| ||||||||||||||    
T  3631540 gaggcacaagacaatgacactcctggccttgtccaccatctcagtcttctccgctcgtgacatggtgacc 3631609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 33309650 - 33309502
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  || |||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| |||| || |||    
T  33309650 tcatatacaaagattccaactttgcccatatcgatgctgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaacgacact 33309551  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||| ||||||||||||||    
T  33309550 cctggccttgtccaccatctcggtcttctccgctcgtgacatggtgacc 33309502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 51750798 - 51750650
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||||||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  51750798 tcatatacaaagattccaactttgcccacatcgatgccgcggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 51750699  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | |||| |||| ||||||||||||||    
T  51750698 cctggccttgtccaccatctcggtcttctccgctcgtgacatggtgacc 51750650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 13127360 - 13127401
Alignment:
Q  196 ttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
    ||||||||||||||| | |||| |||||||||||||||||||    
T  13127360 ttgtccaccatctcagtcttctccgcttgtgacatggtgacc 13127401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 385 - 237
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    |||||||||| || |||| | ||||||| ||||  ||| ||||||  |||| ||| || ||| ||| |||| |||||  ||||||||| ||||||  |||    
T  385 tcatatacaaagattccaactttgcccacatcgatgccacggttgcttcctttgctacttctctcaaaactttatccccgaggcacaagacaatggcact 286  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      |  ||||||||||||||||  | || | |||||||||||||||||||    
T  285 cctggccttgtccaccatctcggtcttttccgcttgtgacatggtgacc 237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 26171460 - 26171312
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    ||||||||||||| |||| | ||| ||| ||||  ||| ||||||  ||||  ||||||||  | | |||| | |||| ||||||||| ||||||  |||    
T  26171460 tcatatacaacgattccaactttgaccatatcgatgccacggttggttccttcgcgacatcccttaaaactttgtcctcgaggcacaagacaatggcact 26171361  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggtgacc 237  Q
      || ||||||||||||||||  | |||| | |||||||||||||||||    
T  26171360 cctagccttgtccaccatctcggtcttctcctcttgtgacatggtgacc 26171312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 29721068 - 29720924
Alignment:
Q  89 tcatatacaacgactccagccttgcccagatcgccgccgcggttgtctcctctgcgacatctgtcataactatatcctagaggcacaatacaatgaaact 188  Q
    ||||||||||||| |||| | ||| ||| ||||  ||||||||||  ||||  ||||||||  ||| |||| | |||  ||||||||| ||||||  |||    
T  29721068 tcatatacaacgattccaactttgaccacatcgatgccgcggttggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatggcact 29720969  T
Q  189 tatatccttgtccaccatctcaattttcttcgcttgtgacatggt 233  Q
      || ||||||||||||||||  | |||| | |||||||||||||    
T  29720968 cctagccttgtccaccatctcggtcttctcctcttgtgacatggt 29720924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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