View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_17 (Length: 277)
Name: NF18577_low_17
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 25698335 - 25698155
Alignment:
| Q |
85 |
atttgcatattaagtctcacggactatgaaaattaaaatgcattgatcgatcgagtagatatgcaatacaaaccatgcatcttaattaatcttgtaacnn |
184 |
Q |
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| T |
25698335 |
atttgcatattaagtctcacggactatgaaaattaaaatgcatagatcgatcgagtatatatacaataaaaaccatgcatcttaattaatcttgttagaa |
25698236 |
T |
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| Q |
185 |
nnnnncacaag------aagctacaaaatcaccaagggacaaatcgatccataagcaaaaacacggttttctctgacatag |
259 |
Q |
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| T |
25698235 |
aagaacacaagctacaaaatatatatcatcaccaagggacaaatcgatccataagcaaaaacacagttttctctgacatag |
25698155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 25681737 - 25681666
Alignment:
| Q |
107 |
actatgaaaattaaaatgcattgatcgatcgagtagatatgcaatacaaaccatgcatcttaattaatcttg |
178 |
Q |
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| T |
25681737 |
actatgaaaagtaacatacatagatcgatcaagtatatatacaatacaaaccatgcatctcaattaatcttg |
25681666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 25681605 - 25681551
Alignment:
| Q |
206 |
atcaccaagggacaaatcgatccataagcaaaaacacggttttctctgacatagt |
260 |
Q |
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| T |
25681605 |
atcaccaaggaacaaatcgatccataagcaaacacacggttgcctctgacatagt |
25681551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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