View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18577_low_18 (Length: 271)
Name: NF18577_low_18
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 23119240 - 23119494
Alignment:
| Q |
1 |
gtgcatatggagatgaagatgtttattctaaaatttttcataaatctcagtatcaaatcgattaaatatcgagtgtattcgtcaataatacatgtgcatc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || | |
|
|
| T |
23119240 |
gtgcatatggggatgaagatgtttattctaaattttttcataaatctcagtatcacatcgattaaatatcgaaggtattcgtcaataatacatgttcaac |
23119339 |
T |
|
| Q |
101 |
ttatttatgttttgtatgtgtacacacacatcgttataattttatcaaatgagtatattctcttgaatgcgtatttctcgtcaaattctatattcattat |
200 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23119340 |
ttatttatgttttgtgtgtgtgtacacacatcgttaccattttatccaatgagtatattttcttgtatgcgtatttctcgtcaaattctatattcattat |
23119439 |
T |
|
| Q |
201 |
gtattggaaattatgctaatatatttcctgtctttcaggatgtcaaggttatgga |
255 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23119440 |
gtattggaaattatgctaatatacttcctgtctttcaggatgtcaaggttatgga |
23119494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 23103785 - 23104023
Alignment:
| Q |
12 |
gatgaagatgtttattctaaaatttttcataaatctcagtatcaaatcgattaaatatcgagtgtattcgtcaataatacatgtgcatcttatttatgtt |
111 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||| ||| ||||| | ||||| | | |||||| |||||||||||||| |||||||||| || |
|
|
| T |
23103785 |
gatgaagatgttcattctaaaaatcgtcataaatctcactatgaaatcaacgaaatagcaaaggtattcatcaataatacatgttcatcttatttgtgcg |
23103884 |
T |
|
| Q |
112 |
ttgtatgtgtacacacacatcgttataattttatcaaatgagtatattctcttgaatgcgtattt-ctcgtcaaattctatattcattatgtattggaaa |
210 |
Q |
| |
|
|||| | |||||||||||| ||| |||||||| |||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
23103885 |
--gtatatatacacacacatcattacaattttatacaatgagtatattcttttgaatgcatattttctcttcaaattctatattcattatgtattgcaaa |
23103982 |
T |
|
| Q |
211 |
ttatgctaatatatttcctgtctttcaggatgtcaaggtta |
251 |
Q |
| |
|
|||| |||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
23103983 |
ttattctaatatacttcatgtctttcatgatgtcaaggtta |
23104023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 23100662 - 23100764
Alignment:
| Q |
149 |
atgagtatattctcttgaatgcgtatttctcgtcaaattctatattcattatgtattggaaattatgctaatatatttcctgtctttcaggatgtcaagg |
248 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||| |||||||| ||| ||||||||| |||||||||| |
|
|
| T |
23100662 |
atgagtatattcttttgaatgcatatttctcttcaaattcaatattcattatgtattgcaaattattctaatatacttcatgtctttcatgatgtcaagg |
23100761 |
T |
|
| Q |
249 |
tta |
251 |
Q |
| |
|
||| |
|
|
| T |
23100762 |
tta |
23100764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University