View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_2 (Length: 612)
Name: NF18577_low_2
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 28497621 - 28497228
Alignment:
| Q |
11 |
caaaggcacaaacacaagacacactattccacaacattgtgcgtgtgacttgtgtctgattttgtatgtcgtgtatgactatgaaagagagagaatatca |
110 |
Q |
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| T |
28497621 |
caaaggcacaaacacaagacacactattccacaacattgtgcgtgtgacttgtgtctgattttgtatgtcgtgtatgactatgaaagagagagaatatca |
28497522 |
T |
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| Q |
111 |
atgtatgtgcgtgtgtgaaatgtgaaatgtgcttatggtgggtccatttaaatattatatggctcaccttctttgaagatacaagcaaaataataagatt |
210 |
Q |
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| T |
28497521 |
atgtatgtgcgtgtgtgaaatgtgaaatgtgcttatggtgggtccatttaaatattatatggctcaccttctttgaagatacaagcaaaataataagatt |
28497422 |
T |
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| Q |
211 |
agaaaatgactactccaaagaccaaaacagcaagagagagccaagacagag-nnnnnnngagaatagtaataatgttatagtatatggttatagttatat |
309 |
Q |
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| T |
28497421 |
agaaaatgactactccaaagaccaaaacagcaagagagagccaagacagagaaaaaaaagagaatagtaataatgttatagtatatggttatagttatat |
28497322 |
T |
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| Q |
310 |
agctatctatgcttttggttttatctatcttcgcagaaaatgaaaatcaaacaaacaagaaagcatacatcacaagtttgaacctcttgcatta |
403 |
Q |
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| T |
28497321 |
agctatctatgcttttggttttatctatcttcgcagaaaatgaaaatcaaacaaacaagaaagcatacatcacaagtttgaacctcttgcatta |
28497228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 484 - 597
Target Start/End: Complemental strand, 28497147 - 28497034
Alignment:
| Q |
484 |
gctgaacgatacactcagccaagtagccaacaactctctctttaaagaaccatccaaaagaatttatgttcactttcttggcttttgctaatcttaaacc |
583 |
Q |
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| T |
28497147 |
gctgaacgatacactcagccaagtagccaacaactctctctttaaagaaccatccaaaagaatttatgttcactttcttggcttttgctaatcttaaacc |
28497048 |
T |
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| Q |
584 |
attgttttcttcct |
597 |
Q |
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| T |
28497047 |
attgttttcttcct |
28497034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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