View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_23 (Length: 257)
Name: NF18577_low_23
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 54472299 - 54472534
Alignment:
| Q |
18 |
atatatttttatatatctcctatttcnnnnnnnaataggaatttgcaaataagcatgttatgaagtttagaatagttaatggaggaag------------ |
105 |
Q |
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| T |
54472299 |
atatatttttatatatctcctatttctttttttaataggaatttgcaaataagcatgttatgaagtttagaatagttaatgggggaagctaattaattaa |
54472398 |
T |
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| Q |
106 |
ttaattaattaatgattcatagcctattcttannnnnnngatcagaaatggatcctctaaagcttttgcatggtgccatagtcgacgcggtagaggatcc |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472399 |
ttaattaattaatgattcatagcctattcttatttttttgatcagaaatggatcctctaaagcttttgcatggtgccatagtcgacgcggtagaggatcc |
54472498 |
T |
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| Q |
206 |
aaatttgaatcttatgtagctacaatatggtgttgc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
54472499 |
aaatttgaatcttatgtagctacaatatggtgttgc |
54472534 |
T |
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