View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_25 (Length: 239)
Name: NF18577_low_25
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 14998715 - 14998931
Alignment:
| Q |
17 |
agatttatggatttagatttcttgcatccacagtcaaactgtcactgatttgaatcgtcaaaccaagatcagacggtccacatttcaactcgatatttta |
116 |
Q |
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| T |
14998715 |
agatttatgggtttagatttcttgcatccaca------cagtcaccgatttgaatcgtctaaccatgattggacggtccacatttcaactctatgtttta |
14998808 |
T |
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| Q |
117 |
gtcttgatttacagagttgaaactatgattgatctaatggtcctggtcgcgtgactgcttcaaatgggtgattttcttgttgcaagaaatcaggatacga |
216 |
Q |
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| T |
14998809 |
gtcttgatttacagagttgaaactatgattgatctaatggtcctggtcgcatgactgcttcaaatgggtgattttcttgttgcaagaaatcaggatatga |
14998908 |
T |
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| Q |
217 |
gtcttatagcacctaatcatcct |
239 |
Q |
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| T |
14998909 |
gttttatagaacctgatcgtcct |
14998931 |
T |
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Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 29467557 - 29467771
Alignment:
| Q |
17 |
agatttatggatttagatttcttgcatccaca--gtcaaactgtcactgatttgaatcgtcaaaccaagatcagacggtccacatttcaactcgatattt |
114 |
Q |
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| T |
29467557 |
agatttgtggatttagatttcatgcatccacacagtcacgctgtcatcgatttgaattgtctagctaagatcaggcggtcctcatttcaactctatattt |
29467656 |
T |
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| Q |
115 |
tagtcttgatttacagagttgaaactatgattgatctaatggtcctggtcgcgtgactgcttcaaatgggtgattttcttgttgcaagaaatcaggatac |
214 |
Q |
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| T |
29467657 |
tagtcttggattacagagttgaaactatgattgatctgacggtcctggttgcatgactgcttcaaataggtgattctcttgttgcaagaaatcaggat-- |
29467754 |
T |
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| Q |
215 |
gagtcttatagcaccta |
231 |
Q |
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| T |
29467755 |
gagttttatagcaccta |
29467771 |
T |
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