View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18577_low_26 (Length: 239)
Name: NF18577_low_26
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 21078236 - 21077996
Alignment:
| Q |
1 |
ttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccaccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21078236 |
ttgttgaacaaggtgatcagagcggtggtgatgtgatttgtggccgccgagtgcagtgccggaggtgaagattctgtggcacaaatcacatttgaacatt |
21078137 |
T |
|
| Q |
101 |
gttgatattaaacaaccaatattctttttctgctcatc------------gtgatcatattctttcttttgttgttgttgtttatggttgtcgtaacaag |
188 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21078136 |
gttgatattgaacaaccaatattctttttctgatcatcagtagcatcatggtgatcatattctttcttttgatgttgttgtttatggttgtcgtaacaag |
21078037 |
T |
|
| Q |
189 |
aacgatgagaaaaatgtttcttcatgatcgtgatgatgatg |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21078036 |
aacgaagagaaaaatgtttcttcatgatcgtgatgatgatg |
21077996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University