View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_3 (Length: 593)
Name: NF18577_low_3
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 36360185 - 36360761
Alignment:
| Q |
1 |
aatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttgaatgcctgaa |
100 |
Q |
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| T |
36360185 |
aatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttgaatgcctgaa |
36360284 |
T |
|
| Q |
101 |
tattattatatgtccaattataggaaaatttaagttannnnnnnagaaaatcatttgatgttaatagaaaaccaaattagtatcgcatgggcatacaaaa |
200 |
Q |
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| T |
36360285 |
tattattatatgtccaattataggaaaatttaagttatttttttagaaaatcatt-gatgttaatagaaaaccaaattagtatcgtatgggcatacaaaa |
36360383 |
T |
|
| Q |
201 |
tattaaatatgaaatttatcaatagttcgtatatattatgatttttaagctacatattaagagtttattatacctgtgtgtcatccgtatgaccatcccc |
300 |
Q |
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| T |
36360384 |
tattaaatatgaaatttatcaatagttcgtatatattttgatttttaagctatatattaagagtttattatacctgtgtgtcatccgtatgaccatcccc |
36360483 |
T |
|
| Q |
301 |
tttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttgctctatcatg |
400 |
Q |
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| T |
36360484 |
tttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttgctctatcatg |
36360583 |
T |
|
| Q |
401 |
ttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtgggtcctgttgcaagttgctattgcaagcaacaa |
500 |
Q |
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| T |
36360584 |
ttcttgaataataatgtatcactatcatcgtaggaaggtgaatcatcaacgtatgtagtaataagtgggtcctcttgcaagttgctattgcaagcaacaa |
36360683 |
T |
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| Q |
501 |
atgaaatgatgacgatagtgaatgagaggaggaaatgtcttaggagggccattatagttaatttcttccctttgtatt |
578 |
Q |
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| T |
36360684 |
atgaaatgatgacgatagtgaatgagaggaggaaatgtcttaggagggccattatagttaatttcttccctttgtatt |
36360761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 442 - 573
Target Start/End: Original strand, 36349259 - 36349390
Alignment:
| Q |
442 |
atcatcaacgtatgtagtaataagtgggtcctgttgcaagttgctattgcaagcaacaaatgaaatgatgacgatagtgaatgagaggaggaaatgtctt |
541 |
Q |
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| T |
36349259 |
atcatcaacgtatgtagtaataagtggaaactcttggaagtagctactgcaagcagcaaatgaaatgatgacgatagtggatgagaggaggaaatgtctt |
36349358 |
T |
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| Q |
542 |
aggagggccattatagttaatttcttcccttt |
573 |
Q |
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| T |
36349359 |
aggagagccattatagttaatttcctcccttt |
36349390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36348921 - 36349031
Alignment:
| Q |
1 |
aatctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgc------cctgacgaacatactacttcccaagccttcttgaatg |
94 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||| || ||||||| || | ||||| ||||||||| ||||||||||||||| ||||| |
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| T |
36348921 |
aatctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagccttctcgaatg |
36349020 |
T |
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| Q |
95 |
cctgaatatta |
105 |
Q |
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||||||||||| |
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| T |
36349021 |
cctgaatatta |
36349031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 36349119 - 36349196
Alignment:
| Q |
269 |
tatacctgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaa |
346 |
Q |
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| T |
36349119 |
tatacctgtgtgtcatcagttttaccatcccctttagctccataatcactgacattaaaaatttgaagtgaacttgaa |
36349196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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