View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_32 (Length: 233)
Name: NF18577_low_32
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11887080 - 11887302
Alignment:
| Q |
1 |
tatgcaaagccttcccattcttcctgttccaaatctcatattcggtcttagaacgcgcaccaatttcaggaatagaggtcacaacaccccacagaccatg |
100 |
Q |
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| T |
11887080 |
tatgcaaagccttcccattcttcctgttccaaatctcatattcgatcttagaacgcgcaccaatttcaggaatagaggtcacaacaccccacagaccatg |
11887179 |
T |
|
| Q |
101 |
tcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgcttgttcctgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11887180 |
tcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatgcttgttcctgtc |
11887279 |
T |
|
| Q |
201 |
attctactgcttcacaatctgtg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
11887280 |
attctactgcttcacaatctgtg |
11887302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 11816563 - 11816676
Alignment:
| Q |
79 |
tcacaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccact |
178 |
Q |
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| T |
11816563 |
tcacaactccccacagatcatgccctgcaagatagtttctcaccaaacagctccaattatcgtagttgtcttttgttagtggttcaagaactattccact |
11816662 |
T |
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| Q |
179 |
cgctgcaatgcttg |
192 |
Q |
| |
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||||||||||||| |
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| T |
11816663 |
tgctgcaatgcttg |
11816676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 11776573 - 11776681
Alignment:
| Q |
81 |
acaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcg |
180 |
Q |
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||||| ||||||||| |||| ||||||||||||||| | |||| |||||||||||| |||||||||||| | || ||||||||||||||||||||||| | |
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| T |
11776573 |
acaacgccccacagatcatgccccacaagatagtttttcaccaaacagctccagttatcgtagttgtctcttgttagtggttcaagaactattccactag |
11776672 |
T |
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| Q |
181 |
ctgcaatgc |
189 |
Q |
| |
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||||||||| |
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| T |
11776673 |
ctgcaatgc |
11776681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 11841874 - 11841988
Alignment:
| Q |
78 |
gtcacaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccac |
177 |
Q |
| |
|
|||||||| ||||||||| |||| ||| ||||||||||||| |||| |||||||||||| |||||||||||||| || |||||||||||||||||| || |
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| T |
11841874 |
gtcacaactccccacagatcatgcccctcaagatagtttctcaccaaacagctccagttatcgtagttgtcttttgttagtggttcaagaactattgcat |
11841973 |
T |
|
| Q |
178 |
tcgctgcaatgcttg |
192 |
Q |
| |
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| |||| |||||||| |
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| T |
11841974 |
ttgctgaaatgcttg |
11841988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 11740077 - 11739970
Alignment:
| Q |
66 |
tcaggaatagaggtcacaacaccccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaa |
165 |
Q |
| |
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|||| |||||| ||||||| ||||||||| | || || | ||||| ||||| |||||||||||||||| || ||||||||||| ||||||||||||| |
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| T |
11740077 |
tcagaaatagaagtcacaaacccccacagatcttgccctaatagataatttctcaccagacagctccagtaatcatagttgtctttcgtcagtggttcaa |
11739978 |
T |
|
| Q |
166 |
gaactatt |
173 |
Q |
| |
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||||||| |
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|
| T |
11739977 |
aaactatt |
11739970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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