View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_33 (Length: 229)
Name: NF18577_low_33
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 8112439 - 8112615
Alignment:
| Q |
38 |
acaatatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatct |
137 |
Q |
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| T |
8112439 |
acaatatacaattgctacctatttactaacaaatcaagagatataacgtagtcaaaagtgttctttaaataagctttagatctttaaaatgcagtaatct |
8112538 |
T |
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| Q |
138 |
ccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
214 |
Q |
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| T |
8112539 |
ccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggcacaaagaggcaaaagaccacagg |
8112615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 8107908 - 8108029
Alignment:
| Q |
91 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttgg |
190 |
Q |
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| T |
8107908 |
aaaagtgttctttaaataagctttagatctttaaaatgcagtaatctccaagaaagaaaaaataagatcaattcccttttgaactattgatagaatttgg |
8108007 |
T |
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| Q |
191 |
cacaaagaggcaaaagaccaca |
212 |
Q |
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| T |
8108008 |
cacaaagaggcaaaagaccaca |
8108029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 8107805 - 8107863
Alignment:
| Q |
38 |
acaatatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
96 |
Q |
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| T |
8107805 |
acaatatacaattgctacctatttactaacaaatcaagagatataacgcagtcaaaagt |
8107863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 8094219 - 8094302
Alignment:
| Q |
107 |
taagctttagatctttaaaatgcagtaatctccaagaaagaaaaaatgagatcaatccccttttgaattattgatagaatttggc |
191 |
Q |
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| T |
8094219 |
taagctttagatctttaaaatacagtaatctccaagaaa-aaaaattaagatcaatcatcttttgaactgttgatagaatttggc |
8094302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 30878977 - 30878923
Alignment:
| Q |
42 |
tatacaattgctacctatttactaataaatcaagagatataacgcagtcaaaagt |
96 |
Q |
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| T |
30878977 |
tatacaatttctatctatttgctaataaatcaagagatataacacagtcaaaagt |
30878923 |
T |
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