View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_8 (Length: 334)
Name: NF18577_low_8
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 11339318 - 11339634
Alignment:
| Q |
1 |
cccaaatcactctaagtcaaatttttgtctccaccaccgcttcaaactgccaaagcgctgccactttatcattcatggttgtttcacaatggtgctttta |
100 |
Q |
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| T |
11339318 |
cccaaatcactctaagtcaaatttt-gtctccaccaccgcttcaaactgccaaagcgctgccgctttatcattcatggttgtttcacaatggtgttttta |
11339416 |
T |
|
| Q |
101 |
tagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgttaataagtgataataatatctaagtcccttaaaa |
200 |
Q |
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| T |
11339417 |
tagctcccaaacctgaaaacaacttcaagtggtatttttatttttcagaacaaaatttgacagtattaataagtgataataatatgtaagttccttaaaa |
11339516 |
T |
|
| Q |
201 |
cttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnctatttttagatgaggttatgtttttgcagtctagtgagacattta |
300 |
Q |
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| T |
11339517 |
cttttcctaattgaattatattcatctgtcctaagatgaatcttataaaaaaacttttttttagatgaggttatgtttttgcagtccagtgagacattta |
11339616 |
T |
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| Q |
301 |
taactgatttgtaaaaca |
318 |
Q |
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|||||||||||||||||| |
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| T |
11339617 |
taactgatttgtaaaaca |
11339634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 68 - 318
Target Start/End: Original strand, 43378810 - 43379053
Alignment:
| Q |
68 |
atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt |
167 |
Q |
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| T |
43378810 |
atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgtt |
43378907 |
T |
|
| Q |
168 |
aataagtgataataatatctaagtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnctattttt----- |
262 |
Q |
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| T |
43378908 |
aataagtgataatagtatgtaagtcccttaaaac----------tgaattatattcatcggttctaagatgaatcttataaaaaaaaatgttttttttta |
43378997 |
T |
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| Q |
263 |
agatgaggttatgtttttgcagtctagtgagacatttataactgatttgtaaaaca |
318 |
Q |
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| T |
43378998 |
agatgaggttatgtttttgcagtcaagtgagacatttataactaatttgtaaaaca |
43379053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 318
Target Start/End: Original strand, 13207583 - 13207827
Alignment:
| Q |
68 |
atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt |
167 |
Q |
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||||||||||||||||| ||||||||| |||||||||||| ||||| ||||| |||||||||||||||| ||||||| ||||||||||||| |||||| |
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| T |
13207583 |
atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggtattt--atttttctgaacaaaatttgatagtgtt |
13207680 |
T |
|
| Q |
168 |
aataagtgataataatatctaagtcccttaaaacttttcctaattgaattatattcatctgtcctaagatgaatcttatnnnnnnnnctattttt----- |
262 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||||| |
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| T |
13207681 |
aataagtgataatagtatgtaagtcccttaaaac----------tgaattatattcatctgttctaagatgaatcttataaaaaaaattttttttttttt |
13207770 |
T |
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| Q |
263 |
-agatgaggttatgtttttgcagtctagtgagacatttataactgatttgtaaaaca |
318 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
13207771 |
aagattaggttatgtttttgcagtcaagtgagacatttataactaatttgtaaaaca |
13207827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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