View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_low_9 (Length: 329)
Name: NF18577_low_9
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 36522329 - 36522119
Alignment:
| Q |
1 |
tttttccgatgctttggtaagaaggaactattaacattgaagttagtgtaaagtgggctgtgaaagatcatgtatacttgtactctttggtcctagaata |
100 |
Q |
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| T |
36522329 |
tttttccaatgttttggtaagaaggaactattagcattgaagttagtgtaaagtgggttgtgaaagatcatgtatacttgttctttttggtcctagaata |
36522230 |
T |
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| Q |
101 |
gcgttatttgaatgtgtatagggatttgaggaccaaaaaagtgggaatctgtcaacatatattggaagatacgttaagggttagcaataaatggaagctt |
200 |
Q |
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| T |
36522229 |
gcgttatttgaatgtgtaaagggatttgaggaccaaaaaagtgggaatatgtcaacatatattggaagatacgttaagggttagcaataaattgaagctt |
36522130 |
T |
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| Q |
201 |
taagttgattg |
211 |
Q |
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| T |
36522129 |
taagttgattg |
36522119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 36522048 - 36522017
Alignment:
| Q |
282 |
tggtcactattcaatggccatttggttagtta |
313 |
Q |
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| T |
36522048 |
tggtcactattcaatggccatttggttagtta |
36522017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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