View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18578_high_1 (Length: 448)

Name: NF18578_high_1
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18578_high_1
NF18578_high_1
[»] chr8 (6 HSPs)
chr8 (135-448)||(1253705-1254014)
chr8 (135-448)||(1243006-1243315)
chr8 (143-232)||(1196975-1197064)
chr8 (160-240)||(1277583-1277663)
chr8 (147-232)||(1227595-1227680)
chr8 (142-286)||(1299976-1300120)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 135 - 448
Target Start/End: Complemental strand, 1254014 - 1253705
Alignment:
Q  135 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1254014 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcacgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaatcc 1253915  T
Q  235 caacctacgatatcaagaaagtcaaaccagttattttttcaagcttcaaggtccgcatattaaatttacatatatgtataatcttaactttttatttacc 334  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1253914 caacctacgatatcaagaaagtcaaaccagttgttttttcaagcttcaaggtccgcatatt-aatttacatatatgtataatcttaactttttatttacc 1253816  T
Q  335 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaactttgctcatcatggattaatgcaggtggagaaagtt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||    
T  1253815 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaacttttctcatcatggat---tgcaggtggagaaagtt 1253719  T
Q  435 ccagacctagatgc 448  Q
    ||||||||||||||    
T  1253718 ccagacctagatgc 1253705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 135 - 448
Target Start/End: Complemental strand, 1243315 - 1243006
Alignment:
Q  135 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1243315 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcacgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaatcc 1243216  T
Q  235 caacctacgatatcaagaaagtcaaaccagttattttttcaagcttcaaggtccgcatattaaatttacatatatgtataatcttaactttttatttacc 334  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1243215 caacctacgatatcaagaaagtcaaaccatttgttttttcaagcttcaaggtccgcatatt-aatttacatatatgtataatcttaactttttatttacc 1243117  T
Q  335 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaactttgctcatcatggattaatgcaggtggagaaagtt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||    
T  1243116 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaacttttctcatcatggat---tgcaggtggagaaagtt 1243020  T
Q  435 ccagacctagatgc 448  Q
    ||||||||||||||    
T  1243019 ccagacctagatgc 1243006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 1197064 - 1196975
Alignment:
Q  143 tccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaat 232  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||| |||  ||| ||||||||||||||||||||    
T  1197064 tccaaagtatgacgggaagttcttacatgaaaaagcacgcgagatattgcaagagacacgtttgagtgacacattgaccaatgttgtaat 1196975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 1277663 - 1277583
Alignment:
Q  160 agttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattccaacct 240  Q
    ||||||||| || |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  1277663 agttcttacgtgctaaaacacgtgagatattgcaagaaacacgtttgcatgatacattgaccaatgttgtaatcccaacct 1277583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 1227680 - 1227595
Alignment:
Q  147 aagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaat 232  Q
    ||||||||||| |  ||||||| |||||||| | |||||||||| ||||||||| |||| ||||| |||||||||||| |||||||    
T  1227680 aagtatgacggaatattcttacgtgataaagtaggtgagatattacaagaaacaagattacatgacacattgaccaatcttgtaat 1227595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 286
Target Start/End: Original strand, 1299976 - 1300120
Alignment:
Q  142 gtccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattccaaccta 241  Q
    |||| ||||||||||| |||||||||||| ||| | || ||||| ||||| |||| |||  | ||||| | |||||||||||||| ||||| ||||| |     
T  1299976 gtcccaagtatgacggcaagttcttacataatatatcacgtgagttattgaaagatacaaaactgcatcagacattgaccaatgtagtaatcccaacatt 1300075  T
Q  242 cgatatcaagaaagtcaaaccagttattttttcaagcttcaaggt 286  Q
    ||| ||||||||| |  | ||||||||||| |||| ||| |||||    
T  1300076 cgacatcaagaaatttcatccagttattttctcaaactttaaggt 1300120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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