View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18578_high_2 (Length: 342)
Name: NF18578_high_2
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18578_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 30412922 - 30413151
Alignment:
| Q |
11 |
tatgaaagattagttaaaagcacacataattagtttattattttcataaaggcaaaatgcatatttaactactatggttttgttgtggctcttctctttc |
110 |
Q |
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| T |
30412922 |
tatgaaagattagttaaaagcacacataattagtttattattttcataaaggcaaaatacatatttaactactatggttttgttgtggctcttctctttc |
30413021 |
T |
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| Q |
111 |
tttcaacttgatcataaaacaatcaattaaaatagcagccaggacaaaaataattgtttttagtttttacacgttcacatttgcttttctactctataat |
210 |
Q |
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| T |
30413022 |
tttcaacttgatcataaaacaatcaattaaaatagcagccaggacaaaaataattgtttttag-ttttacacgttcacatttgcttttcttctctataat |
30413120 |
T |
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| Q |
211 |
ttcaatgcgttgcttatacaaacttatgtat |
241 |
Q |
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| T |
30413121 |
ttcaatgcgttgcttatacaaacttatgtat |
30413151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 43 - 246
Target Start/End: Original strand, 30403789 - 30403985
Alignment:
| Q |
43 |
gtttattattttcataaaggcaaaatgcatatttaactactatggttttgttgtggctcttctctttctttcaacttgatcataaaacaatcaattaaaa |
142 |
Q |
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| T |
30403789 |
gtttattattttcataaaggcaaaatacatatttaactactatggtcttgttgtggctcttctctttctttcaagttgatcataaaacaaccaattaaag |
30403888 |
T |
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| Q |
143 |
tagcagccaggacaaaaataattgtttttagtttttacacgttcacatttgcttttctactctataatttcaatgcgttgcttatacaaacttatgtatt |
242 |
Q |
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| T |
30403889 |
tagcagccaggacaaaaata-------tttgttttcacacgttcacatttgcttttcttctctataatttcaaggccttgctaatgcaaacttatgtttt |
30403981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 30410428 - 30410548
Alignment:
| Q |
11 |
tatgaaagattagttaaaagcacacataattagtttattattttc--ataaaggcaaaatgcatatttaactactatggttttgttgtggctcttctctt |
108 |
Q |
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| T |
30410428 |
tatgaaagattaattaaaaacacacataattagtttattattttataataaaggtaaaatacatatttaactactatggttttgttgtggctctattctt |
30410527 |
T |
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| Q |
109 |
tctttcaacttgatcataaaa |
129 |
Q |
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| T |
30410528 |
tctttcaacttgatcataaaa |
30410548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 30419877 - 30419917
Alignment:
| Q |
111 |
tttcaacttgatcataaaacaatcaattaaaatagcagcca |
151 |
Q |
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| T |
30419877 |
tttcaacttgatcttaaaacaatcaattaaagtagcagcca |
30419917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 30410574 - 30410611
Alignment:
| Q |
289 |
acactgagaattaacaagagacaagaaggggtccaatc |
326 |
Q |
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| T |
30410574 |
acactgaaaattaacaagagacaagaagaggtccaatc |
30410611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 30404008 - 30404048
Alignment:
| Q |
286 |
gttacactgagaattaacaagagacaagaaggggtccaatc |
326 |
Q |
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||| |||||| |||||| ||||||||||||||||||||||| |
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| T |
30404008 |
gttgcactgaaaattaaaaagagacaagaaggggtccaatc |
30404048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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