View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18578_high_3 (Length: 333)
Name: NF18578_high_3
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18578_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 4359597 - 4359886
Alignment:
| Q |
14 |
tttttcctatggttctaaactaaattactcaattttttgtaactattgaagatgtatttttagttaaaaatcttaggaaaagtcgatnnnnnnntgcacc |
113 |
Q |
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| T |
4359597 |
ttttttctatggttttaaactaaattactcaattttttgtaactattgaagatgtatttttagttaaaaatcttaggaaaagtcgataaaaaaatgcacc |
4359696 |
T |
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| Q |
114 |
tatattttgtacattttataatactccttttttcaaatcgtgtaatgtaataatcaaaataaatatagtttgaaaataattattatgatgttcaatgcca |
213 |
Q |
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| T |
4359697 |
tatattttgtacattttataatactccttttttcaaatcgtgtaatgtaataatcaaaataaatatagtttgaaaataattattatgaagttcaatgcca |
4359796 |
T |
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| Q |
214 |
tgcttataatgcaaacagaaaattaatctaaatgattgaaactaatatttcgacattccaatatacaataatgtaaataaaataaaatga |
303 |
Q |
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| T |
4359797 |
tgcttataatgcaaacagaaaattaatctaaatgattgaaactaatatttcgacattccaatatacaataatgtaaataaaataaaatga |
4359886 |
T |
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