View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18578_high_5 (Length: 264)
Name: NF18578_high_5
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18578_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 1967098 - 1967332
Alignment:
| Q |
17 |
catttaaacactttccttctactgcattagcacttattgataagcttctttcaatggaaccacaaaaacgaggatctgcaacttctgctcttgagagtga |
116 |
Q |
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| T |
1967098 |
catttaaacactttccttctactgcattagcacttgttgataagcttctttcaatggaaccacaaaaacgaggatctgcaacttctgctcttgagagtga |
1967197 |
T |
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| Q |
117 |
ggtaattctccgcaacattctctcttttttctttcgttcacatatagtatgtgtgacaattagtcagtatcaaattttgaattttacaatgagctccaag |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
1967198 |
ggtaattctccgcaatattctctcttttttctttcgttcacatatagtatgtgtgacagttagtcagtatcaaattttgaatttttcaatgagctccaag |
1967297 |
T |
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| Q |
217 |
agcttatcattataatggagtctttaaaattgatg |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1967298 |
agcttatcattataatggagtctttaaaattgatg |
1967332 |
T |
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