View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18578_high_6 (Length: 252)
Name: NF18578_high_6
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18578_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 30412588 - 30412825
Alignment:
| Q |
15 |
aatatacattgttttaaagaatatatacagaactggtgcttcctatgtgtaagaactaaatgaaatgttatattgtcataatataatgcacatcatgtta |
114 |
Q |
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| T |
30412588 |
aatatacattgttttaaagaatatatacagagctggtgcttcctatgtgtaagaactaaatgaaatgttatattgtcataatataatgcacatcatgtta |
30412687 |
T |
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| Q |
115 |
ataatataaatcttaatcatagtataccatgtcatgatcaaattcttttaatagcaaacgttagtgattagttgttagattgggttttctccttcgtcca |
214 |
Q |
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| T |
30412688 |
ataatataaatcttaatcatagtataccatgtcatgatcaaattcttttaatagcaaacgttagtgattagttgttagattgggttttctccttcgtcca |
30412787 |
T |
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| Q |
215 |
agtttaaaccataatcttcaactccttattctttaact |
252 |
Q |
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| T |
30412788 |
agtttaaaccataatcttcaactccttattctttaact |
30412825 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 6296967 - 6296919
Alignment:
| Q |
160 |
ttttaatagcaaacgttagtgattagttgttagattgggttttctcctt |
208 |
Q |
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| T |
6296967 |
ttttaatggcaaatgttagtaattagttgttagattagtttttctcctt |
6296919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 32398835 - 32398783
Alignment:
| Q |
160 |
ttttaatagcaaacgttagtgattagttgttagattgggttttctccttcgtc |
212 |
Q |
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| T |
32398835 |
ttttaatggcaaatattagtaattagttgttagattagtttttctccttcgtc |
32398783 |
T |
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