View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18578_low_1 (Length: 613)
Name: NF18578_low_1
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18578_low_1 |
 | |
|
| [»] chr1 (12 HSPs) |
| |
|
| [»] scaffold0400 (2 HSPs) |
| |
|
| [»] scaffold0365 (2 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 15016736 - 15017332
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016736 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
15016835 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15016836 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagttcctgaacaaattgaatcattgcacgaattaactgcatt |
15016935 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15016936 |
ggagcttgcagcaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgaagttaaatttgagccaaaataagtttgagggg |
15017035 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017036 |
aacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15017135 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15017136 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatgtatctta |
15017235 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| ||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
15017236 |
caaccagttggagggtccgactccaaacattacagctttcggaagagctccaattgaagcattgacaaataacaagggcttgtgtggtaatatctct |
15017332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 609
Target Start/End: Original strand, 15001728 - 15002320
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | | | ||||||||||||||| |
|
|
| T |
15001728 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgcgaaaaattccaaaggagt |
15001827 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||||| ||||||||| || |||||||||| |
|
|
| T |
15001828 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttatggagaagttccagtacaaattgcatcattgcatcaactaactgcatt |
15001927 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15001928 |
ggagcttgcaacaaataatttgagtggattcatccctgaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgagggg |
15002027 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002028 |
aacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15002127 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002128 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctaaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15002227 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgt |
609 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002228 |
caaccagttggagggtccgactccaaacattacagctttcgaaagagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgt |
15002320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 15010621 - 15011217
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
15010621 |
aatttaacaggaagaataccaccagaactaggaagtgcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagt |
15010720 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||| || |||||||||| |
|
|
| T |
15010721 |
tagaatacttatctttgttgttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcatt |
15010820 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010821 |
ggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgagggg |
15010920 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010921 |
aacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15011020 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011021 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15011120 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
15011121 |
caaccaattggagggtccgattccaaatgttacagctttcaaaagagctccaattgaagcattgacaaataacaaaggcttatgtggtaatgtctct |
15011217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 15032079 - 15032675
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
15032079 |
aatttaacaggaagaataccaccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagc |
15032178 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
15032179 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcatt |
15032278 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032279 |
ggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaataagtttgagggg |
15032378 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15032379 |
aacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagttaa |
15032478 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032479 |
atcgcttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15032578 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
15032579 |
caaccagttggagggtccaattccaaacattacagctttcaaaaaagctccaattgaagcattgacaaataacaaaggcttatgtggtaatgtctct |
15032675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 15036641 - 15037237
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| | ||| |||||||||||||||| |
|
|
| T |
15036641 |
aatttaactggaagaataccaccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaacgatctaatgggaaaaattccaaaggagc |
15036740 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
|| || | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| || |||||||||| |
|
|
| T |
15036741 |
taaaatatttatctttgttgttcaaactctcgttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcatt |
15036840 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
15036841 |
ggagcttgcaacaaataacttaagtggcttcatcctggaaaaacttggtatgttgtctaggttattgcagttgaatttgagccataataagcttgagggg |
15036940 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036941 |
aacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15037040 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037041 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattcccttaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15037140 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
15037141 |
caaccagttggagggtccgattccaaacattacagctttcaaaagagctccaattgaagcattgacaaataacaaaggcttatgtggtaatgtctct |
15037237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Original strand, 15024738 - 15025237
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
15024738 |
aatttaacaggaagaataccaccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagc |
15024837 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
15024838 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcatt |
15024937 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15024938 |
ggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaataagtttgagggg |
15025037 |
T |
|
| Q |
318 |
aacattcctg-ttagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15025038 |
aacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagttaa |
15025137 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025138 |
atcgcttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15025237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 26 - 613
Target Start/End: Complemental strand, 14523107 - 14522519
Alignment:
| Q |
26 |
aggaagcataccaccagaactaggcaga-gcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaaa |
124 |
Q |
| |
|
||||||||||||||||||| | ||| || ||||| ||||||||| |||| ||||||| ||||| || |||| || |||||||||||||| |||| ||| |
|
|
| T |
14523107 |
aggaagcataccaccagaatt-ggctgaagcaaccaatttacatatacttgacttgtcctcaaatcaacttataggaaaaattccaaaggatctaggaaa |
14523009 |
T |
|
| Q |
125 |
cttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcattggagctt |
224 |
Q |
| |
|
||||||| ||||| |||||||| ||||||| ||||||||||| |||||||| ||| ||| |||| ||||||||| ||| ||||| ||||||| ||| |
|
|
| T |
14523008 |
cttatctgcactgatccaactctcgataagtaataatcatctttcgggagaagttcctatgcagattgcatcattgcatgaactaactacattggatctt |
14522909 |
T |
|
| Q |
225 |
gcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgaggggaacattc |
324 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
14522908 |
gcaacaaataatttaagtggttttatccctgaaaaacttggaaggttgtctaggttattgcagttgaatttgagccaaaataagtttgaaggaaacattc |
14522809 |
T |
|
| Q |
325 |
ctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcactt |
423 |
Q |
| |
|
||||| | |||| |||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||| |||||||||| |||||||||| ||| |
|
|
| T |
14522808 |
ctgttgaacttggtcaattgaatgttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaacaatgcttggacagttaaatcgctt |
14522709 |
T |
|
| Q |
424 |
agaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccag |
523 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
14522708 |
agaaacattgaatctctcacataataatctctatggtaacattcccttaagcttttttgatatgttaagtttgacaactgttgatatatcttacaaccgg |
14522609 |
T |
|
| Q |
524 |
ttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||| ||||||||||| ||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
14522608 |
ttggagggtccaattccaaacattacagcattccaaagagctccagttgaagcatttagaaataacaaaggcttgtgcggtaatgtctct |
14522519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 14467424 - 14468015
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14467424 |
aatttaacaggaagcataccgccagaactaggccgagcaacaaatttacatgaactaaacctgtcttcaaaccatcttacgggaaaaattccaaaggagc |
14467523 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |||| ||| ||| ||||||||| || || | | || |
|
|
| T |
14467524 |
tagaaagcttatctttgttgatccaactctcggtaagtaacaatcatctttcaggagaagttcctgcacaagttgcatcattgcaaaaactagatacctt |
14467623 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
||||||| ||||||||||||| ||||| | ||||| || ||||||| | ||||| | |||||| || || ||||| ||| |||||| |||||| || |
|
|
| T |
14467624 |
ggagctttcaacaaataatttaagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaagga |
14467723 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||| ||||| | |||| |||||||| ||||||||| |||| ||||||| |
|
|
| T |
14467724 |
aacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaa |
14467823 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
14467824 |
atcacttagaaacattgaatctctcacataataatctttctggtaccattctcttcagctcagttgatatgttaagcttgacaactgtagatatatcgta |
14467923 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| || ||||||| ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
14467924 |
caaccagttggagggtccgattccaagcattccagccttccaacaggctccaattgaagcactgagaaacaacaaagacttgtgtggtaatg |
14468015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 60 - 608
Target Start/End: Original strand, 14503645 - 14504194
Alignment:
| Q |
60 |
aatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaaacttatctttgttgatcaaactctcgttaagtaaca |
159 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
14503645 |
aatttacatgaacttaacttgtcatcaaaccatcttactggaaaaattccaaaggatctaggaaacttgtctttgttgatcaaactctcgataagtaaca |
14503744 |
T |
|
| Q |
160 |
atcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcattggagcttgcaacaaataatttcagtggcttcatccctgaaaa |
259 |
Q |
| |
|
|||||||||||||||| || ||| ||||||| ||||||||| | | ||||| | ||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
14503745 |
atcatctttctggagaggttcctatacaaattgcatcattgcaagcactaactaccttggagcttgcaacaaataatttaagtggcttcatccctagaag |
14503844 |
T |
|
| Q |
260 |
acttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaat |
358 |
Q |
| |
|
|||||| | ||||||| |||| | || || ||||||||||||||||||||||| || |||||||| ||| ||||||||| ||| |||||||||||| || |
|
|
| T |
14503845 |
acttggaaggttgtctgagttaatacatttgaatttgagccaaaataagtttgaaggaaacattcccgttgagtttggccgattaaatgttattgaagat |
14503944 |
T |
|
| Q |
359 |
cttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
458 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||| ||||| ||||| |||| ||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
14503945 |
cttgatctcagtggaaattttatgaatggaacgataccttcaatgtttggagtgttaaatcatttagaaacattgaatctctcacataataatctgtctg |
14504044 |
T |
|
| Q |
459 |
gtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggagggtccgattccaagcattacagctttcaa |
558 |
Q |
| |
|
|||| || |||| |||| || |||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||| |||| ||| | |
|
|
| T |
14504045 |
gtacgatcccctttagctctggtgatatgttaagcttgacaattattgatatatcatacaaccaattggagggtccgattccaagcattccagccttcca |
14504144 |
T |
|
| Q |
559 |
aagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatg |
608 |
Q |
| |
|
| |||||||| ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
14504145 |
acaagctccaattgaagcactgagaaacaacaaagacttgtgtggtaatg |
14504194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 613
Target Start/End: Complemental strand, 14533236 - 14532640
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| || ||||||||||| | ||||||||| |||||||| | ||||| |||||||| ||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
14533236 |
aatttaactggaagcatacctcaagaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccagaggagc |
14533137 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| ||| ||||||| |||||| |||||||| |||| ||||||| |||| |||| | | ||||||| || |
|
|
| T |
14533136 |
taggaaacttatctttgttaatcaaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgcctt |
14533037 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||| || |||||| | ||||||| |||| | || || |||||||||||||||||||| || || |
|
|
| T |
14533036 |
ggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataagttcgaagga |
14532937 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||||||| |||||| |||||| || ||||||||| ||||||||||||||| ||| ||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
14532936 |
aacattcctgttgagtttgaccaattaaaggttattgaagatcttgatcttagtgaaaatgttatgagtggaaccataccatcaatgcttggacagttaa |
14532837 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| || |
|
|
| T |
14532836 |
atcacttacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcata |
14532737 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| ||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14532736 |
caaccaattggagggtccaattccaagcattacagccttccaaaaagctccaattgaagcacttagaaataacaaaggcttgtgtggtaatgtctct |
14532640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 278 - 613
Target Start/End: Original strand, 14481866 - 14482202
Alignment:
| Q |
278 |
gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaat |
376 |
Q |
| |
|
|||||| || || ||||| ||| |||||| |||||| || ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||| |||| |
|
|
| T |
14481866 |
gttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaat |
14481965 |
T |
|
| Q |
377 |
tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagct |
476 |
Q |
| |
|
| | |||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || | |
|
|
| T |
14481966 |
tttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattgaatctctcacataataatctttctggtaccattcccttcagat |
14482065 |
T |
|
| Q |
477 |
ttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagc |
576 |
Q |
| |
|
|| | | ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||| | | | |||||| |||||| |
|
|
| T |
14482066 |
atggttagatgttaagcttgataactgtagatatatcgtacaaccagttggagggtccgattccaagcattccagccttccagaaaactccaattgaagc |
14482165 |
T |
|
| Q |
577 |
actgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
14482166 |
actgagaaacaacaaagacttgtgtggtaatgcctct |
14482202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 216 - 613
Target Start/End: Original strand, 15040578 - 15040961
Alignment:
| Q |
216 |
ttggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagg |
315 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| || ||||||| | || |||| |||||| || |||||| ||||||||||||||||||| | |
|
|
| T |
15040578 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
15040677 |
T |
|
| Q |
316 |
ggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
414 |
Q |
| |
|
| |||||||||| | || |||| || || || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15040678 |
gaaacattcctgatgagattggacagttaaaagttattgaaaatcttgatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
15040777 |
T |
|
| Q |
415 |
aaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatct |
514 |
Q |
| |
|
||||| ||||||||||||| ||||| | | |||||||||||| | || || ||| |||| | |||||||||||||||||||||| |
|
|
| T |
15040778 |
aaatcgcttagaaacattg---------------aatcttttttgtaccattcccttgacctatggtgagatgtcaggcttgacaactgttgatatatca |
15040862 |
T |
|
| Q |
515 |
tacaaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
| |||||| ||| ||||||| ||||||| ||| || | ||| | ||| ||| ||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
15040863 |
tgcaaccaattgaagggtccaattccaaaaatttcatccttcctacaagccccatttgaagcattaagaaataacaaaggcttgtgtggtaatgtctct |
15040961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 12400 - 12996
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| || ||||||||||| | ||||||||| |||||||| | ||||| |||||||| ||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
12400 |
aatttaactggaagcataccgcaagaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagc |
12499 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| ||| ||||||| |||||| |||||||| |||| ||||||| |||| |||| | | ||||||| || |
|
|
| T |
12500 |
taggaaacttatctttgttaatcaaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgcctt |
12599 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||| || |||||| | ||||||| |||| | || || |||||||||||||||| |||||| || |
|
|
| T |
12600 |
ggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaagga |
12699 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||| || ||||||||||||| | ||||||||| ||||||| |||||||| |||| | |||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
12700 |
aacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaa |
12799 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
||||| || ||||||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| || |
|
|
| T |
12800 |
atcacatacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcata |
12899 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||| ||||||||||||||||| | |||| |||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12900 |
caaccaattggagggtccgattcctaacattccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
12996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 103 - 606
Target Start/End: Original strand, 6197 - 6701
Alignment:
| Q |
103 |
aaattccaaaggagctagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgca |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||| | |||| | |||||| |||||||||| |||||||| ||||| ||||||| || |||||| |
|
|
| T |
6197 |
aaattccaaaggagctaggaaacttatcctcattgatccagctcttgataagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgca |
6296 |
T |
|
| Q |
203 |
cgaattaactgcattggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaa |
302 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| | || ||| |||||| | || |||||||||||| |
|
|
| T |
6297 |
taaaataactatcttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaa |
6396 |
T |
|
| Q |
303 |
aataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaa |
401 |
Q |
| |
|
||||||||||| || ||||||||| | ||||||| |||||||| |||||||||||||||||||||| | |||| | ||||||||||||||||| ||| |
|
|
| T |
6397 |
aataagtttgaaggagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaa |
6496 |
T |
|
| Q |
402 |
tgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaac |
501 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||| | || || ||| |||| |||||| ||||| |
|
|
| T |
6497 |
tgcttggagagttaaatcgcttagaaacattgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaac |
6596 |
T |
|
| Q |
502 |
tgttgatatatcttacaaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgt |
601 |
Q |
| |
|
| |||||||||| |||||||| || || ||||| ||||||| |||| |||| ||||||| ||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
6597 |
tattgatatatcatacaaccaatttgaaggtccaattccaaacattccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgt |
6696 |
T |
|
| Q |
602 |
ggtaa |
606 |
Q |
| |
|
||||| |
|
|
| T |
6697 |
ggtaa |
6701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 13043 - 13639
Alignment:
| Q |
18 |
aatttgacaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagc |
117 |
Q |
| |
|
||||| || ||||||||||| | ||||||||| |||||||| | ||||| |||||||| ||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
13043 |
aatttaactggaagcataccgcaagaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagc |
13142 |
T |
|
| Q |
118 |
tagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgcacgaattaactgcatt |
217 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| ||| ||||||| |||||| |||||||| |||| ||||||| |||| |||| | | ||||||| || |
|
|
| T |
13143 |
taggaaacttatctttgttaatcaaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgcctt |
13242 |
T |
|
| Q |
218 |
ggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaaaataagtttgagggg |
317 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||| || |||||| | ||||||| |||| | || || |||||||||||||||| |||||| || |
|
|
| T |
13243 |
ggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaagga |
13342 |
T |
|
| Q |
318 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
416 |
Q |
| |
|
|||||||| || ||||||||||||| | ||||||||| ||||||| |||||||| |||| | |||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
13343 |
aacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaa |
13442 |
T |
|
| Q |
417 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
516 |
Q |
| |
|
||||| || ||||||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| || |
|
|
| T |
13443 |
atcacatacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcata |
13542 |
T |
|
| Q |
517 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||| ||||||||||||||||| | |||| |||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13543 |
caaccaattggagggtccgattcctaacattccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
13639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 103 - 606
Target Start/End: Original strand, 6841 - 7345
Alignment:
| Q |
103 |
aaattccaaaggagctagaaaacttatctttgttgatcaaactctcgttaagtaacaatcatctttctggagaagtccctgagcaaattgaatcattgca |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||| | |||| | |||||| |||||||||| |||||||| ||||| ||||||| || |||||| |
|
|
| T |
6841 |
aaattccaaaggagctaggaaacttatcctcattgatccagctcttgataagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgca |
6940 |
T |
|
| Q |
203 |
cgaattaactgcattggagcttgcaacaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgcagttaaatttgagccaa |
302 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| | || ||| |||||| | || |||||||||||| |
|
|
| T |
6941 |
taaaataactatcttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaa |
7040 |
T |
|
| Q |
303 |
aataagtttgaggggaacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaa |
401 |
Q |
| |
|
||||||||||| || ||||||||| | ||||||| |||||||| |||||||||||||||||||||| | |||| | ||||||||||||||||| ||| |
|
|
| T |
7041 |
aataagtttgaaggagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaa |
7140 |
T |
|
| Q |
402 |
tgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaac |
501 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||| | || || ||| |||| |||||| ||||| |
|
|
| T |
7141 |
tgcttggagagttaaatcgcttagaaacattgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaac |
7240 |
T |
|
| Q |
502 |
tgttgatatatcttacaaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgt |
601 |
Q |
| |
|
| |||||||||| |||||||| || || ||||| ||||||| |||| |||| ||||||| ||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
7241 |
tattgatatatcatacaaccaatttgaaggtccaattccaaacattccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgt |
7340 |
T |
|
| Q |
602 |
ggtaa |
606 |
Q |
| |
|
||||| |
|
|
| T |
7341 |
ggtaa |
7345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 383 - 613
Target Start/End: Original strand, 16102867 - 16103097
Alignment:
| Q |
383 |
aatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttg |
482 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||| ||||| |||||||| ||||||| | |
|
|
| T |
16102867 |
aatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctggctttattccctctagctttgatc |
16102966 |
T |
|
| Q |
483 |
atatgttaagcttgacaactgttgatatatcttacaaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgag |
582 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| || ||||| ||||||||||| | || | |||| |||||||| || ||| ||| |||| |||| |
|
|
| T |
16102967 |
aaatgttaagcttgacatctgttgatatatcatataaccaattggagggtccactccccaacattcgagctttcagaaacgctacaatcgaagtgttgag |
16103066 |
T |
|
| Q |
583 |
aaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| |
|
|
| T |
16103067 |
aaataataaagacttgtgtggtaatgtctct |
16103097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 332 - 613
Target Start/End: Original strand, 14605834 - 14606115
Alignment:
| Q |
332 |
tttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacat |
431 |
Q |
| |
|
||||| ||||| ||||| |||||| || ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |||| ||||||| |
|
|
| T |
14605834 |
tttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacat |
14605933 |
T |
|
| Q |
432 |
tgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggaggg |
531 |
Q |
| |
|
||||| |||||||||| ||||| |||||| |||||||| ||||| | | | ||||| ||||| ||| ||||||||||||| || ||||| |||||||| |
|
|
| T |
14605934 |
tgaatatctcacataataatctttctggttttattccctctagcttcgatcagatgttcagcttaacatctgttgatatatcatataaccaattggaggg |
14606033 |
T |
|
| Q |
532 |
tccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
||| | || | ||| |||||||| | ||| ||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
14606034 |
tccactccccaatattcgagctttcagcaacgctacaattgaagtggtgagaaataataaaggcttgtgtggtaatgtctct |
14606115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 613
Target Start/End: Original strand, 16025011 - 16025292
Alignment:
| Q |
332 |
tttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacat |
431 |
Q |
| |
|
||||| ||||| ||||| |||||| || ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |||| ||||||| |
|
|
| T |
16025011 |
tttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacat |
16025110 |
T |
|
| Q |
432 |
tgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggaggg |
531 |
Q |
| |
|
||||| |||||||||| ||||| |||||| |||||||| ||||| | | | ||||| ||||| || ||||||||||||| || ||||| |||||||| |
|
|
| T |
16025111 |
tgaatatctcacataataatctttctggttttattccctctagcttcgatcagatgttcagcttaacgtctgttgatatatcatataaccaattggaggg |
16025210 |
T |
|
| Q |
532 |
tccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
613 |
Q |
| |
|
||| | || | ||| |||||||| | ||| ||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
16025211 |
tccactccccaatattcgagctttcagcaacgctacaattgaagtggtgagaaataataaaggcttgtgtggtaatgtctct |
16025292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 534
Target Start/End: Original strand, 16172520 - 16172695
Alignment:
| Q |
359 |
cttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
458 |
Q |
| |
|
|||||||| ||||| |||| | | |||||||| |||||| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
16172520 |
cttgatctgagtggaaattttttaaatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctg |
16172619 |
T |
|
| Q |
459 |
gtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggagggtcc |
534 |
Q |
| |
|
| |||||||| ||||| | | | ||||| || || || ||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
16172620 |
gatttattccctctagcttcgatcagatgttcagtttaacgtctgttgatatatcatataaccaattggaaggtcc |
16172695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 16024755 - 16024819
Alignment:
| Q |
71 |
acttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaaacttatctttgt |
135 |
Q |
| |
|
|||| |||| |||||||||||||| || ||| |||||||||||||| || ||||||||||||| |
|
|
| T |
16024755 |
acttgacttatcttcaaaccatctcacaggggaaattccaaaggagttaagcaacttatctttgt |
16024819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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