View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18578_low_2 (Length: 448)

Name: NF18578_low_2
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18578_low_2
NF18578_low_2
[»] chr8 (6 HSPs)
chr8 (135-448)||(1253705-1254014)
chr8 (135-448)||(1243006-1243315)
chr8 (143-232)||(1196975-1197064)
chr8 (160-240)||(1277583-1277663)
chr8 (147-232)||(1227595-1227680)
chr8 (142-286)||(1299976-1300120)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 135 - 448
Target Start/End: Complemental strand, 1254014 - 1253705
Alignment:
Q  135 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1254014 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcacgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaatcc 1253915  T
Q  235 caacctacgatatcaagaaagtcaaaccagttattttttcaagcttcaaggtccgcatattaaatttacatatatgtataatcttaactttttatttacc 334  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1253914 caacctacgatatcaagaaagtcaaaccagttgttttttcaagcttcaaggtccgcatatt-aatttacatatatgtataatcttaactttttatttacc 1253816  T
Q  335 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaactttgctcatcatggattaatgcaggtggagaaagtt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||    
T  1253815 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaacttttctcatcatggat---tgcaggtggagaaagtt 1253719  T
Q  435 ccagacctagatgc 448  Q
    ||||||||||||||    
T  1253718 ccagacctagatgc 1253705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 135 - 448
Target Start/End: Complemental strand, 1243315 - 1243006
Alignment:
Q  135 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1243315 tccgagcgtccaaagtatgacgggaagttcttacatgataaagcacgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaatcc 1243216  T
Q  235 caacctacgatatcaagaaagtcaaaccagttattttttcaagcttcaaggtccgcatattaaatttacatatatgtataatcttaactttttatttacc 334  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1243215 caacctacgatatcaagaaagtcaaaccatttgttttttcaagcttcaaggtccgcatatt-aatttacatatatgtataatcttaactttttatttacc 1243117  T
Q  335 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaactttgctcatcatggattaatgcaggtggagaaagtt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||    
T  1243116 attaatgtttgttttttctaagcttgagtagaatactctaactcgtgggtgttaattgtgaaacttttctcatcatggat---tgcaggtggagaaagtt 1243020  T
Q  435 ccagacctagatgc 448  Q
    ||||||||||||||    
T  1243019 ccagacctagatgc 1243006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 1197064 - 1196975
Alignment:
Q  143 tccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaat 232  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||| |||  ||| ||||||||||||||||||||    
T  1197064 tccaaagtatgacgggaagttcttacatgaaaaagcacgcgagatattgcaagagacacgtttgagtgacacattgaccaatgttgtaat 1196975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 1277663 - 1277583
Alignment:
Q  160 agttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattccaacct 240  Q
    ||||||||| || |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  1277663 agttcttacgtgctaaaacacgtgagatattgcaagaaacacgtttgcatgatacattgaccaatgttgtaatcccaacct 1277583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 1227680 - 1227595
Alignment:
Q  147 aagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaat 232  Q
    ||||||||||| |  ||||||| |||||||| | |||||||||| ||||||||| |||| ||||| |||||||||||| |||||||    
T  1227680 aagtatgacggaatattcttacgtgataaagtaggtgagatattacaagaaacaagattacatgacacattgaccaatcttgtaat 1227595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 286
Target Start/End: Original strand, 1299976 - 1300120
Alignment:
Q  142 gtccaaagtatgacgggaagttcttacatgataaagcatgtgagatattgcaagaaacacgattgcatgatacattgaccaatgttgtaattccaaccta 241  Q
    |||| ||||||||||| |||||||||||| ||| | || ||||| ||||| |||| |||  | ||||| | |||||||||||||| ||||| ||||| |     
T  1299976 gtcccaagtatgacggcaagttcttacataatatatcacgtgagttattgaaagatacaaaactgcatcagacattgaccaatgtagtaatcccaacatt 1300075  T
Q  242 cgatatcaagaaagtcaaaccagttattttttcaagcttcaaggt 286  Q
    ||| ||||||||| |  | ||||||||||| |||| ||| |||||    
T  1300076 cgacatcaagaaatttcatccagttattttctcaaactttaaggt 1300120  T

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