View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18578_low_8 (Length: 235)
Name: NF18578_low_8
Description: NF18578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18578_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 29048729 - 29048939
Alignment:
| Q |
10 |
gagatgaagacaatctaaataatattgttgtcattttattttattttcttaaggtcgtattagaatagaaaaccacaacagaaaagtctacgaattagta |
109 |
Q |
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| T |
29048729 |
gagaagaagacgatctaaataatattattatcattttattttattttcttaaggtcgtattagaatagaaaaccacaacagaaaagtctacgaattagta |
29048828 |
T |
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| Q |
110 |
aagtnnnnnnnnnnnnnnnnnnnnntataagataccaacacaataactaaatgaaaactcatgtaatattttagtggaagctatcttgcataaatctttt |
209 |
Q |
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||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29048829 |
gagtaaaaataaaagtaaaataaaatataagataccaacacaataattaaatgacaactcatgtaatattttagtggaagctatcttgcttaaatctttt |
29048928 |
T |
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| Q |
210 |
gctgttgatag |
220 |
Q |
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||| ||||||| |
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| T |
29048929 |
gctattgatag |
29048939 |
T |
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