View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18579_high_19 (Length: 249)

Name: NF18579_high_19
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18579_high_19
NF18579_high_19
[»] chr1 (20 HSPs)
chr1 (1-218)||(41026174-41026391)
chr1 (214-249)||(25694417-25694452)
chr1 (216-249)||(1050986-1051019)
chr1 (216-249)||(12483627-12483660)
chr1 (216-249)||(14984935-14984968)
chr1 (217-249)||(11796031-11796063)
chr1 (217-249)||(26471065-26471097)
chr1 (217-249)||(27159358-27159390)
chr1 (217-249)||(31842795-31842827)
chr1 (217-249)||(39401966-39401998)
chr1 (217-249)||(44668093-44668125)
chr1 (217-249)||(47777481-47777513)
chr1 (215-245)||(16448210-16448240)
chr1 (215-249)||(47216697-47216731)
chr1 (220-249)||(9981745-9981774)
chr1 (216-245)||(11897053-11897082)
chr1 (216-245)||(11897156-11897185)
chr1 (212-245)||(17556747-17556780)
chr1 (216-245)||(17556855-17556884)
chr1 (216-249)||(34042794-34042827)
[»] chr8 (20 HSPs)
chr8 (213-249)||(2890158-2890194)
chr8 (214-249)||(25600997-25601032)
chr8 (215-249)||(54610-54644)
chr8 (216-249)||(7785777-7785810)
chr8 (216-249)||(7805698-7805731)
chr8 (216-249)||(32211362-32211395)
chr8 (216-249)||(39571202-39571235)
chr8 (216-249)||(43199353-43199386)
chr8 (216-249)||(44498186-44498219)
chr8 (217-249)||(6552753-6552785)
chr8 (217-249)||(33289261-33289293)
chr8 (212-244)||(41915588-41915620)
chr8 (211-249)||(32114469-32114507)
chr8 (216-249)||(7012269-7012302)
chr8 (216-249)||(12763653-12763686)
chr8 (212-249)||(21504935-21504972)
chr8 (217-249)||(3304278-3304310)
chr8 (217-245)||(8587170-8587198)
chr8 (209-245)||(25878163-25878199)
chr8 (217-245)||(31654613-31654641)
[»] chr5 (16 HSPs)
chr5 (213-249)||(21576044-21576080)
chr5 (215-249)||(17025722-17025756)
chr5 (215-249)||(37642052-37642086)
chr5 (216-249)||(9395448-9395481)
chr5 (216-249)||(13103122-13103155)
chr5 (216-249)||(36563537-36563570)
chr5 (216-249)||(41989406-41989439)
chr5 (217-249)||(6126922-6126954)
chr5 (217-249)||(20848171-20848203)
chr5 (215-249)||(11795266-11795300)
chr5 (217-247)||(38361713-38361743)
chr5 (216-249)||(13033149-13033182)
chr5 (216-249)||(26350349-26350382)
chr5 (216-244)||(1643466-1643494)
chr5 (217-249)||(23360040-23360072)
chr5 (217-249)||(37148955-37148987)
[»] chr4 (23 HSPs)
chr4 (213-249)||(3904679-3904715)
chr4 (213-249)||(53337468-53337504)
chr4 (216-249)||(3422158-3422191)
chr4 (216-249)||(41469765-41469798)
chr4 (216-249)||(47838616-47838649)
chr4 (217-249)||(6121893-6121925)
chr4 (217-249)||(20538686-20538718)
chr4 (217-249)||(42797830-42797862)
chr4 (217-249)||(46797823-46797855)
chr4 (217-249)||(47833709-47833741)
chr4 (217-249)||(51894582-51894614)
chr4 (214-249)||(3993074-3993109)
chr4 (214-245)||(40913291-40913322)
chr4 (215-249)||(24704468-24704502)
chr4 (216-249)||(5986974-5987007)
chr4 (212-245)||(7579305-7579338)
chr4 (216-249)||(33621894-33621927)
chr4 (216-245)||(43900548-43900577)
chr4 (216-249)||(48336361-48336394)
chr4 (217-249)||(3372219-3372251)
chr4 (217-245)||(4780397-4780425)
chr4 (212-240)||(17284729-17284757)
chr4 (217-249)||(43900647-43900679)
[»] chr7 (18 HSPs)
chr7 (214-249)||(9268854-9268889)
chr7 (216-249)||(1738446-1738479)
chr7 (216-249)||(7240847-7240880)
chr7 (216-249)||(7482323-7482356)
chr7 (216-249)||(28536750-28536783)
chr7 (217-249)||(22285797-22285829)
chr7 (217-249)||(23314139-23314171)
chr7 (217-249)||(46840958-46840990)
chr7 (215-245)||(5347720-5347750)
chr7 (216-249)||(4790346-4790379)
chr7 (216-245)||(22285698-22285727)
chr7 (216-249)||(36583493-36583526)
chr7 (216-249)||(38063912-38063945)
chr7 (217-249)||(94318-94350)
chr7 (214-242)||(2523894-2523922)
chr7 (217-249)||(31319399-31319431)
chr7 (217-245)||(36016298-36016326)
chr7 (217-249)||(38441558-38441590)
[»] chr6 (16 HSPs)
chr6 (214-249)||(6068664-6068699)
chr6 (214-249)||(6330213-6330248)
chr6 (214-249)||(11572142-11572177)
chr6 (215-249)||(13853591-13853625)
chr6 (216-249)||(8099628-8099661)
chr6 (216-249)||(9644794-9644827)
chr6 (216-249)||(9650811-9650844)
chr6 (216-249)||(26602421-26602454)
chr6 (217-249)||(2830433-2830465)
chr6 (217-249)||(8382969-8383001)
chr6 (213-249)||(22896560-22896596)
chr6 (215-249)||(35030999-35031033)
chr6 (216-249)||(33052793-33052826)
chr6 (217-249)||(8417793-8417825)
chr6 (217-249)||(17992086-17992118)
chr6 (217-245)||(22896471-22896499)
[»] chr3 (24 HSPs)
chr3 (214-249)||(51406771-51406806)
chr3 (215-249)||(8437523-8437557)
chr3 (215-249)||(46208128-46208162)
chr3 (215-249)||(49823379-49823413)
chr3 (212-249)||(2787827-2787864)
chr3 (212-249)||(9111489-9111526)
chr3 (216-249)||(10298077-10298110)
chr3 (212-249)||(22722029-22722066)
chr3 (216-249)||(40690995-40691028)
chr3 (217-249)||(6013336-6013368)
chr3 (217-249)||(19557052-19557084)
chr3 (217-249)||(21295326-21295358)
chr3 (217-249)||(34080030-34080062)
chr3 (217-249)||(38964490-38964522)
chr3 (217-249)||(48340495-48340527)
chr3 (215-249)||(37509019-37509053)
chr3 (214-244)||(40215022-40215052)
chr3 (215-245)||(46208028-46208058)
chr3 (216-249)||(4238692-4238725)
chr3 (216-249)||(8817385-8817418)
chr3 (216-249)||(17653810-17653843)
chr3 (220-249)||(42507358-42507387)
chr3 (217-245)||(17653712-17653740)
chr3 (217-245)||(37508921-37508949)
[»] chr2 (23 HSPs)
chr2 (214-249)||(44398784-44398819)
chr2 (215-249)||(13344582-13344616)
chr2 (215-249)||(38917520-38917554)
chr2 (216-249)||(3055656-3055689)
chr2 (216-249)||(6648518-6648551)
chr2 (216-249)||(9047754-9047787)
chr2 (216-249)||(37666609-37666642)
chr2 (216-249)||(37990012-37990045)
chr2 (216-249)||(41478638-41478671)
chr2 (217-249)||(12337937-12337969)
chr2 (217-249)||(13197710-13197742)
chr2 (217-249)||(15372324-15372356)
chr2 (217-249)||(15896940-15896972)
chr2 (217-249)||(16044317-16044349)
chr2 (214-249)||(44397645-44397680)
chr2 (215-249)||(30099180-30099214)
chr2 (216-245)||(13775832-13775861)
chr2 (216-249)||(16243782-16243815)
chr2 (216-245)||(30852719-30852748)
chr2 (216-245)||(41492895-41492924)
chr2 (216-245)||(42263468-42263497)
chr2 (220-249)||(44804581-44804610)
chr2 (212-240)||(41153098-41153126)
[»] scaffold0482 (1 HSPs)
scaffold0482 (216-249)||(12958-12991)
[»] scaffold0009 (1 HSPs)
scaffold0009 (217-249)||(49603-49635)
[»] scaffold0464 (1 HSPs)
scaffold0464 (216-249)||(6130-6163)
[»] scaffold0204 (1 HSPs)
scaffold0204 (216-249)||(23883-23916)
[»] scaffold0002 (1 HSPs)
scaffold0002 (216-245)||(492303-492332)
[»] scaffold0007 (2 HSPs)
scaffold0007 (217-245)||(77344-77372)
scaffold0007 (216-244)||(77466-77494)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 41026174 - 41026391
Alignment:
Q  1 aaggcacaaacaagaaatctttatatatagtgtatatgacttttatagtctaccgtaacttggcttcaaatgttcttagcgttacgttaacaacattgat 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41026174 aaggcacaaacaagaaatctttatatatggtgtatatgacttttatagtctaccgtaacttggcttcaaatgttcttagcgttacgttaactacattgat 41026273  T
Q  101 attttgattcctctaaaaagaacgttgatcttttgatattctaacatgttaaaatataattatggttaagtttgtttaattctatcctggatagtttaaa 200  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41026274 cttttgattcctctaaaaaaaacgttgatcttttgatattctaacatgttaaaatataattatggttaagtttgtttaattctatcctggatagtttaaa 41026373  T
Q  201 aaacacataagtaatata 218  Q
    ||||||||||||||||||    
T  41026374 aaacacataagtaatata 41026391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 25694452 - 25694417
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  25694452 atatactccctccggtcctatttataagagaatttt 25694417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 1051019 - 1050986
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  1051019 atactccctccggtcctatttataagagaatttt 1050986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 12483627 - 12483660
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  12483627 atactccctccggtcctatttataagagaatttt 12483660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 14984968 - 14984935
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  14984968 atactccctccggtcctatttataagagaatttt 14984935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 11796063 - 11796031
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  11796063 tactccctccggtcctatttataagagaatttt 11796031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 26471065 - 26471097
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  26471065 tactccctccggtcctatttataagagaatttt 26471097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 27159358 - 27159390
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  27159358 tactccctccggtcctatttataagagaatttt 27159390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 31842795 - 31842827
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  31842795 tactccctccggtcctatttataagagaatttt 31842827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 39401966 - 39401998
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  39401966 tactccctccggtcctatttataagagaatttt 39401998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 44668093 - 44668125
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  44668093 tactccctccggtcctatttataagagaatttt 44668125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 47777481 - 47777513
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  47777481 tactccctccggtcctatttataagagaatttt 47777513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Complemental strand, 16448240 - 16448210
Alignment:
Q  215 tatactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||||    
T  16448240 tatactccctccggtcctatttataagagaa 16448210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 47216697 - 47216731
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||| |||||||||||||||||||    
T  47216697 tatactccctccggtactatttataagagaatttt 47216731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 9981774 - 9981745
Alignment:
Q  220 tccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||    
T  9981774 tccctccggtcctatttataagagaatttt 9981745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 11897053 - 11897082
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  11897053 atactccctccggtcctatttataagagaa 11897082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 11897185 - 11897156
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  11897185 atactccctccggtcctatttataagagaa 11897156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 17556747 - 17556780
Alignment:
Q  212 taatatactccctccggtcctatttataagagaa 245  Q
    |||||||||||||| |||||||||||||||||||    
T  17556747 taatatactccctctggtcctatttataagagaa 17556780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 17556884 - 17556855
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  17556884 atactccctccggtcctatttataagagaa 17556855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 34042827 - 34042794
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||| |||||||||||||||||||    
T  34042827 atactccctccggttctatttataagagaatttt 34042794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 2890158 - 2890194
Alignment:
Q  213 aatatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  2890158 aatatactccctccggtcctatttataagagaatttt 2890194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 25600997 - 25601032
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  25600997 atatactccctccggtcctatttataagagaatttt 25601032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 54610 - 54644
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  54610 tatactccctccggtcctatttataagagaatttt 54644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 7785777 - 7785810
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  7785777 atactccctccggtcctatttataagagaatttt 7785810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 7805698 - 7805731
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  7805698 atactccctccggtcctatttataagagaatttt 7805731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 32211362 - 32211395
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  32211362 atactccctccggtcctatttataagagaatttt 32211395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 39571202 - 39571235
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  39571202 atactccctccggtcctatttataagagaatttt 39571235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 43199353 - 43199386
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  43199353 atactccctccggtcctatttataagagaatttt 43199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 44498186 - 44498219
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  44498186 atactccctccggtcctatttataagagaatttt 44498219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 6552785 - 6552753
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  6552785 tactccctccggtcctatttataagagaatttt 6552753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 33289261 - 33289293
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  33289261 tactccctccggtcctatttataagagaatttt 33289293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 41915588 - 41915620
Alignment:
Q  212 taatatactccctccggtcctatttataagaga 244  Q
    |||||||||||||||||||||||||||||||||    
T  41915588 taatatactccctccggtcctatttataagaga 41915620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 32114469 - 32114507
Alignment:
Q  211 gtaatatactccctccggtcctatttataagagaatttt 249  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  32114469 gtaaaatactccctccggtcctatttataagaaaatttt 32114507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 7012302 - 7012269
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||| ||||||||||||||||||||||||||||    
T  7012302 atacttcctccggtcctatttataagagaatttt 7012269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 12763653 - 12763686
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  12763653 atactccctccggtcctatttataagataatttt 12763686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 21504972 - 21504935
Alignment:
Q  212 taatatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  21504972 taatatactccctctggtactatttataagagaatttt 21504935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 3304278 - 3304310
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||| ||||||    
T  3304278 tactccctccggtcctatttataagaaaatttt 3304310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 8587170 - 8587198
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  8587170 tactccctccggtcctatttataagagaa 8587198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 25878163 - 25878199
Alignment:
Q  209 aagtaatatactccctccggtcctatttataagagaa 245  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  25878163 aagtgatatactccctccagtcctatttataagagaa 25878199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 31654613 - 31654641
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  31654613 tactccctccggtcctatttataagagaa 31654641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 21576080 - 21576044
Alignment:
Q  213 aatatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  21576080 aatatactccctccggtcctatttataagagaatttt 21576044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 17025756 - 17025722
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  17025756 tatactccctccggtcctatttataagagaatttt 17025722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 37642086 - 37642052
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  37642086 tatactccctccggtcctatttataagagaatttt 37642052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 9395481 - 9395448
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  9395481 atactccctccggtcctatttataagagaatttt 9395448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 13103155 - 13103122
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  13103155 atactccctccggtcctatttataagagaatttt 13103122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 36563537 - 36563570
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  36563537 atactccctccggtcctatttataagagaatttt 36563570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 41989406 - 41989439
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  41989406 atactccctccggtcctatttataagagaatttt 41989439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 6126954 - 6126922
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  6126954 tactccctccggtcctatttataagagaatttt 6126922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 20848203 - 20848171
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  20848203 tactccctccggtcctatttataagagaatttt 20848171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 11795300 - 11795266
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||| ||||||||||||||||||||||    
T  11795300 tatactccctccagtcctatttataagagaatttt 11795266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 38361713 - 38361743
Alignment:
Q  217 tactccctccggtcctatttataagagaatt 247  Q
    |||||||||||||||||||||||||||||||    
T  38361713 tactccctccggtcctatttataagagaatt 38361743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 13033182 - 13033149
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  13033182 atactccctccgatcctatttataagagaatttt 13033149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 26350349 - 26350382
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||| ||||||||    
T  26350349 atactccctccggtcctatttataaaagaatttt 26350382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 1643494 - 1643466
Alignment:
Q  216 atactccctccggtcctatttataagaga 244  Q
    |||||||||||||||||||||||||||||    
T  1643494 atactccctccggtcctatttataagaga 1643466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 23360072 - 23360040
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||| ||||||||||||||||||||||||||||    
T  23360072 tactacctccggtcctatttataagagaatttt 23360040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 37148955 - 37148987
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||| ||||||||    
T  37148955 tactccctccggtcctatttataatagaatttt 37148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 3904679 - 3904715
Alignment:
Q  213 aatatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  3904679 aatatactccctccggtcctatttataagagaatttt 3904715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 53337504 - 53337468
Alignment:
Q  213 aatatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  53337504 aatatactccctccggtcctatttataagagaatttt 53337468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 3422191 - 3422158
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  3422191 atactccctccggtcctatttataagagaatttt 3422158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 41469765 - 41469798
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  41469765 atactccctccggtcctatttataagagaatttt 41469798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 47838616 - 47838649
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  47838616 atactccctccggtcctatttataagagaatttt 47838649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 6121893 - 6121925
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  6121893 tactccctccggtcctatttataagagaatttt 6121925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 20538686 - 20538718
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  20538686 tactccctccggtcctatttataagagaatttt 20538718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 42797862 - 42797830
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  42797862 tactccctccggtcctatttataagagaatttt 42797830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 46797855 - 46797823
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  46797855 tactccctccggtcctatttataagagaatttt 46797823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 47833741 - 47833709
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  47833741 tactccctccggtcctatttataagagaatttt 47833709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 51894582 - 51894614
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  51894582 tactccctccggtcctatttataagagaatttt 51894614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 3993109 - 3993074
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||| ||||||||||||||||||    
T  3993109 atatactccctccggtcttatttataagagaatttt 3993074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 40913322 - 40913291
Alignment:
Q  214 atatactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||||    
T  40913322 atatactccctccggtcctatttataagagaa 40913291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 24704502 - 24704468
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||| |||||||||||||||||||||    
T  24704502 tatactccctccgatcctatttataagagaatttt 24704468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 5987007 - 5986974
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    |||||| |||||||||||||||||||||||||||    
T  5987007 atactctctccggtcctatttataagagaatttt 5986974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 7579305 - 7579338
Alignment:
Q  212 taatatactccctccggtcctatttataagagaa 245  Q
    ||||||||| ||||||||||||||||||||||||    
T  7579305 taatatactacctccggtcctatttataagagaa 7579338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 33621927 - 33621894
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  33621927 atactccctccggtcctatttataagataatttt 33621894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 43900548 - 43900577
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  43900548 atactccctccggtcctatttataagagaa 43900577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 48336394 - 48336361
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  48336394 atactccctccggtcctatttataagaaaatttt 48336361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 3372251 - 3372219
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||| ||||||    
T  3372251 tactccctccggtcctatttataagataatttt 3372219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 4780425 - 4780397
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  4780425 tactccctccggtcctatttataagagaa 4780397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 17284729 - 17284757
Alignment:
Q  212 taatatactccctccggtcctatttataa 240  Q
    |||||||||||||||||||||||||||||    
T  17284729 taatatactccctccggtcctatttataa 17284757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 43900679 - 43900647
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||| ||||||||||||||||||||||||||||    
T  43900679 tacttcctccggtcctatttataagagaatttt 43900647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 9268889 - 9268854
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  9268889 atatactccctccggtcctatttataagagaatttt 9268854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 1738446 - 1738479
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  1738446 atactccctccggtcctatttataagagaatttt 1738479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 7240880 - 7240847
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  7240880 atactccctccggtcctatttataagagaatttt 7240847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 7482356 - 7482323
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  7482356 atactccctccggtcctatttataagagaatttt 7482323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 28536750 - 28536783
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  28536750 atactccctccggtcctatttataagagaatttt 28536783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 22285829 - 22285797
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  22285829 tactccctccggtcctatttataagagaatttt 22285797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 23314139 - 23314171
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  23314139 tactccctccggtcctatttataagagaatttt 23314171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 46840990 - 46840958
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  46840990 tactccctccggtcctatttataagagaatttt 46840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Original strand, 5347720 - 5347750
Alignment:
Q  215 tatactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||||    
T  5347720 tatactccctccggtcctatttataagagaa 5347750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 4790379 - 4790346
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||| ||||||||||||||||||||||||||||    
T  4790379 atacttcctccggtcctatttataagagaatttt 4790346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 22285698 - 22285727
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  22285698 atactccctccggtcctatttataagagaa 22285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 36583526 - 36583493
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  36583526 atactccctccgatcctatttataagagaatttt 36583493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 38063912 - 38063945
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    |||||||||| |||||||||||||||||||||||    
T  38063912 atactccctctggtcctatttataagagaatttt 38063945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 94318 - 94350
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||| |||||||||||||||||||||    
T  94318 tactccctccgatcctatttataagagaatttt 94350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 2523922 - 2523894
Alignment:
Q  214 atatactccctccggtcctatttataaga 242  Q
    |||||||||||||||||||||||||||||    
T  2523922 atatactccctccggtcctatttataaga 2523894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 31319399 - 31319431
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||| |||||||||||||||||||    
T  31319399 tactccctccggttctatttataagagaatttt 31319431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 36016326 - 36016298
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  36016326 tactccctccggtcctatttataagagaa 36016298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 38441590 - 38441558
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||| ||||||||||||||||||||||||||||    
T  38441590 tacttcctccggtcctatttataagagaatttt 38441558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 6068699 - 6068664
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  6068699 atatactccctccggtcctatttataagagaatttt 6068664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 6330248 - 6330213
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  6330248 atatactccctccggtcctatttataagagaatttt 6330213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 11572142 - 11572177
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  11572142 atatactccctccggtcctatttataagagaatttt 11572177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 13853591 - 13853625
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  13853591 tatactccctccggtcctatttataagagaatttt 13853625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 8099661 - 8099628
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  8099661 atactccctccggtcctatttataagagaatttt 8099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 9644827 - 9644794
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  9644827 atactccctccggtcctatttataagagaatttt 9644794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 9650844 - 9650811
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  9650844 atactccctccggtcctatttataagagaatttt 9650811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 26602454 - 26602421
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  26602454 atactccctccggtcctatttataagagaatttt 26602421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 2830465 - 2830433
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  2830465 tactccctccggtcctatttataagagaatttt 2830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 8382969 - 8383001
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  8382969 tactccctccggtcctatttataagagaatttt 8383001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 22896596 - 22896560
Alignment:
Q  213 aatatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22896596 aatatactcccgccggtcctatttataagagaatttt 22896560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 35030999 - 35031033
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||| ||||||||||||||||||||||||||||    
T  35030999 tatacttcctccggtcctatttataagagaatttt 35031033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 33052793 - 33052826
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||| ||||||||||||||||||||||||||    
T  33052793 atactccatccggtcctatttataagagaatttt 33052826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 8417793 - 8417825
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||| ||||||||||||||||||||||||    
T  8417793 tactcccttcggtcctatttataagagaatttt 8417825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 17992118 - 17992086
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||| ||||||||||||||||||||||||    
T  17992118 tactcccttcggtcctatttataagagaatttt 17992086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 22896471 - 22896499
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  22896471 tactccctccggtcctatttataagagaa 22896499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 51406806 - 51406771
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  51406806 atatactccctccggtcctatttataagagaatttt 51406771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 8437557 - 8437523
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  8437557 tatactccctccggtcctatttataagagaatttt 8437523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 46208162 - 46208128
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  46208162 tatactccctccggtcctatttataagagaatttt 46208128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 49823379 - 49823413
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  49823379 tatactccctccggtcctatttataagagaatttt 49823413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 2787827 - 2787864
Alignment:
Q  212 taatatactccctccggtcctatttataagagaatttt 249  Q
    |||| |||||||||||||||||||||||||||||||||    
T  2787827 taatctactccctccggtcctatttataagagaatttt 2787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 9111489 - 9111526
Alignment:
Q  212 taatatactccctccggtcctatttataagagaatttt 249  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  9111489 taatatattccctccggtcctatttataagagaatttt 9111526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 10298110 - 10298077
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  10298110 atactccctccggtcctatttataagagaatttt 10298077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 22722066 - 22722029
Alignment:
Q  212 taatatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22722066 taatatactccatccggtcctatttataagagaatttt 22722029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 40690995 - 40691028
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  40690995 atactccctccggtcctatttataagagaatttt 40691028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 6013336 - 6013368
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  6013336 tactccctccggtcctatttataagagaatttt 6013368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 19557052 - 19557084
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  19557052 tactccctccggtcctatttataagagaatttt 19557084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 21295326 - 21295358
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  21295326 tactccctccggtcctatttataagagaatttt 21295358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 34080030 - 34080062
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  34080030 tactccctccggtcctatttataagagaatttt 34080062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 38964522 - 38964490
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  38964522 tactccctccggtcctatttataagagaatttt 38964490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 48340527 - 48340495
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  48340527 tactccctccggtcctatttataagagaatttt 48340495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 37509053 - 37509019
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||| ||||||||||||||||||||||||||||    
T  37509053 tatactacctccggtcctatttataagagaatttt 37509019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 40215052 - 40215022
Alignment:
Q  214 atatactccctccggtcctatttataagaga 244  Q
    |||||||||||||||||||||||||||||||    
T  40215052 atatactccctccggtcctatttataagaga 40215022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Original strand, 46208028 - 46208058
Alignment:
Q  215 tatactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||||    
T  46208028 tatactccctccggtcctatttataagagaa 46208058  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 4238725 - 4238692
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||| ||||||||||||||||||||||||||||    
T  4238725 atactacctccggtcctatttataagagaatttt 4238692  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 8817385 - 8817418
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||| ||||||||||||||||||||||||||    
T  8817385 atactccttccggtcctatttataagagaatttt 8817418  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 17653843 - 17653810
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||| ||||||||||||||||||||||||||||    
T  17653843 atactacctccggtcctatttataagagaatttt 17653810  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 220 - 249
Target Start/End: Original strand, 42507358 - 42507387
Alignment:
Q  220 tccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||    
T  42507358 tccctccggtcctatttataagagaatttt 42507387  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 17653712 - 17653740
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  17653712 tactccctccggtcctatttataagagaa 17653740  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 37508921 - 37508949
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  37508921 tactccctccggtcctatttataagagaa 37508949  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 44398819 - 44398784
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  44398819 atatactccctccggtcctatttataagagaatttt 44398784  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 13344616 - 13344582
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  13344616 tatactccctccggtcctatttataagagaatttt 13344582  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 38917520 - 38917554
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  38917520 tatactccctccggtcctatttataagagaatttt 38917554  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 3055689 - 3055656
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  3055689 atactccctccggtcctatttataagagaatttt 3055656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 6648518 - 6648551
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  6648518 atactccctccggtcctatttataagagaatttt 6648551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 9047754 - 9047787
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  9047754 atactccctccggtcctatttataagagaatttt 9047787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 37666609 - 37666642
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  37666609 atactccctccggtcctatttataagagaatttt 37666642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 37990012 - 37990045
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  37990012 atactccctccggtcctatttataagagaatttt 37990045  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 41478638 - 41478671
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  41478638 atactccctccggtcctatttataagagaatttt 41478671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 12337937 - 12337969
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  12337937 tactccctccggtcctatttataagagaatttt 12337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 13197710 - 13197742
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  13197710 tactccctccggtcctatttataagagaatttt 13197742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 15372356 - 15372324
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  15372356 tactccctccggtcctatttataagagaatttt 15372324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 15896972 - 15896940
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  15896972 tactccctccggtcctatttataagagaatttt 15896940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 16044317 - 16044349
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  16044317 tactccctccggtcctatttataagagaatttt 16044349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 44397680 - 44397645
Alignment:
Q  214 atatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||| |||||||||||||||||||||||||    
T  44397680 atatactccccccggtcctatttataagagaatttt 44397645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 30099180 - 30099214
Alignment:
Q  215 tatactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||| ||||||||||    
T  30099180 tatactccctccggtcctatttattagagaatttt 30099214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 13775861 - 13775832
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  13775861 atactccctccggtcctatttataagagaa 13775832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 16243782 - 16243815
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||| ||||||||||||||||||||||||||    
T  16243782 atactccatccggtcctatttataagagaatttt 16243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 30852748 - 30852719
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  30852748 atactccctccggtcctatttataagagaa 30852719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 41492895 - 41492924
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  41492895 atactccctccggtcctatttataagagaa 41492924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 42263468 - 42263497
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  42263468 atactccctccggtcctatttataagagaa 42263497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 220 - 249
Target Start/End: Original strand, 44804581 - 44804610
Alignment:
Q  220 tccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||    
T  44804581 tccctccggtcctatttataagagaatttt 44804610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 41153098 - 41153126
Alignment:
Q  212 taatatactccctccggtcctatttataa 240  Q
    |||||||||||||||||||||||||||||    
T  41153098 taatatactccctccggtcctatttataa 41153126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 12991 - 12958
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  12991 atactccctccggtcctatttataagagaatttt 12958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 49635 - 49603
Alignment:
Q  217 tactccctccggtcctatttataagagaatttt 249  Q
    |||||||||||||||||||||||||||||||||    
T  49635 tactccctccggtcctatttataagagaatttt 49603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 6130 - 6163
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  6130 atactccctccggtcctatttataagaaaatttt 6163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 23916 - 23883
Alignment:
Q  216 atactccctccggtcctatttataagagaatttt 249  Q
    ||||||||||||||||||||||||||| ||||||    
T  23916 atactccctccggtcctatttataagaaaatttt 23883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 492303 - 492332
Alignment:
Q  216 atactccctccggtcctatttataagagaa 245  Q
    ||||||||||||||||||||||||||||||    
T  492303 atactccctccggtcctatttataagagaa 492332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 77344 - 77372
Alignment:
Q  217 tactccctccggtcctatttataagagaa 245  Q
    |||||||||||||||||||||||||||||    
T  77344 tactccctccggtcctatttataagagaa 77372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 77494 - 77466
Alignment:
Q  216 atactccctccggtcctatttataagaga 244  Q
    |||||||||||||||||||||||||||||    
T  77494 atactccctccggtcctatttataagaga 77466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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