View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18579_high_4 (Length: 534)
Name: NF18579_high_4
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_high_4 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] scaffold0653 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 9276632 - 9276094
Alignment:
| Q |
1 |
ttatagtgttcaattaaaagtaaattaccttggattttccattaggcatgttttggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9276632 |
ttatagtgttcaattaaaagtaaattaccttggattttccattaggcatgttttggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagc |
9276533 |
T |
|
| Q |
101 |
aaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttcctcaaattgtttacaataacgtaggaagtagaattctctaatagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9276532 |
aaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttcctcaaattgtttacaataacgtaggaagtagaattctctaatagga |
9276433 |
T |
|
| Q |
201 |
acaagtggtgaaagcacttgcaactcttcatacatcttnnnnnnnttattgaatgatatcgtaaaatacatcgatacaaaaatacgtctaaaataagtgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
9276432 |
acaagtggtgaaagcacttgcaactcttcatacatctaaaaaaaattattgaatgatatcgtaaaatacatcgatacaaaaatacatctaaaataagtgt |
9276333 |
T |
|
| Q |
301 |
tcgtctaaccgaacagcgnnnnnnnnttaatcataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtttttgcc |
400 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9276332 |
tagtctaaccgaacagcgaaaaaaaattaatcataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtctttgcg |
9276233 |
T |
|
| Q |
401 |
attgtcacaatagttggaaatagctccatcaac-----ttgttctacaaaatcaatcattaaatttgcttaattaagttaactaaattgaattagtgaat |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9276232 |
attgtcacaatagttggaaatagctccatccacttgtgttgttctacaaaatcaatctttaaatttgcttaattaagttaactaaattgaattagtgaat |
9276133 |
T |
|
| Q |
496 |
tcaaatatnnnnnnncactataatagaataagaagttct |
534 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |
|
|
| T |
9276132 |
tcaaatctaaaaaaacactataatagaataagaagttct |
9276094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 9294284 - 9293746
Alignment:
| Q |
1 |
ttatagtgttcaattaaaagtaaattaccttggattttccattaggcatgttttggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9294284 |
ttatagtgttcaattaaaagtaaattaccttggattttccattaggcatgttttggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagc |
9294185 |
T |
|
| Q |
101 |
aaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttcctcaaattgtttacaataacgtaggaagtagaattctctaatagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9294184 |
aaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttcctcaaattgtttacaataacgtaggaagtagaattctctaatagga |
9294085 |
T |
|
| Q |
201 |
acaagtggtgaaagcacttgcaactcttcatacatcttnnnnnnnttattgaatgatatcgtaaaatacatcgatacaaaaatacgtctaaaataagtgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9294084 |
acaagtggtgaaagcacttgcaactcttcatacatctaaaaaaaattattgaatgatatcgtaaaatacatcgatacaaaaatacatctaaaataagtgt |
9293985 |
T |
|
| Q |
301 |
tcgtctaaccgaacagcgnnnnnnnnttaatcataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtttttgcc |
400 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9293984 |
tagtctaaccgaacagcgaaaaaaaattaatcataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtctttgcg |
9293885 |
T |
|
| Q |
401 |
attgtcacaatagttggaaatagctccatcaac-----ttgttctacaaaatcaatcattaaatttgcttaattaagttaactaaattgaattagtgaat |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293884 |
attgtcacaatagttggaaatagctccatccacttgtgttgttctacaaaatcaatctttaaatttgcttaattaagttaactaaattgaattagtgaat |
9293785 |
T |
|
| Q |
496 |
tcaaatatnnnnnnncactataatagaataagaagttct |
534 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |
|
|
| T |
9293784 |
tcaaatctaaaaaaacactataatagaataagaagttct |
9293746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 55 - 534
Target Start/End: Complemental strand, 9249709 - 9249225
Alignment:
| Q |
55 |
ggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9249709 |
ggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttc |
9249610 |
T |
|
| Q |
155 |
ctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatcttnnnnnnnttattgaat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9249609 |
ctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatctaaaaaaaattattgaat |
9249510 |
T |
|
| Q |
255 |
gatatcgtaaaatacatcgatacaaaaatacgtctaaaataagtgttcgtctaaccgaacagcgnnnnnnnnttaatcataccaattgcaaagaaccatc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9249509 |
gatatcgtaaaatacatcgatacaaaaatacatctaaaataagtgttagtctaaccgaacagcgaaaaaaaattaatcataccaattgcaaagaaccatc |
9249410 |
T |
|
| Q |
355 |
aagaccatccttcgttcgagaagatataacttcaatagtttttgccattgtcacaatagttggaaatagctccatcaac-----ttgttctacaaaatca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
9249409 |
aagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctccatccacttgtgttgttctacaaaatca |
9249310 |
T |
|
| Q |
450 |
atcattaaatttgcttaattaagttaactaaattgaattagtgaattcaaatatnnnnnnncactataatagaataagaagttct |
534 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9249309 |
atctttaaatttgcttaattaagttaactaaattgaattagtgaattcaaatctaaaaaaacactataatagaataagaagttct |
9249225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 55 - 534
Target Start/End: Complemental strand, 9283259 - 9282775
Alignment:
| Q |
55 |
ggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9283259 |
ggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccatccttc |
9283160 |
T |
|
| Q |
155 |
ctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatcttnnnnnnnttattgaat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9283159 |
ctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatctaaaaaaaattattgaat |
9283060 |
T |
|
| Q |
255 |
gatatcgtaaaatacatcgatacaaaaatacgtctaaaataagtgttcgtctaaccgaacagcgnnnnnnnnttaatcataccaattgcaaagaaccatc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9283059 |
gatatcgtaaaatacatcgatacaaaaatacatctaaaataagtgttagtctaaccgaacagcgaaaaaaaattaatcataccaattgcaaagaaccatc |
9282960 |
T |
|
| Q |
355 |
aagaccatccttcgttcgagaagatataacttcaatagtttttgccattgtcacaatagttggaaatagctccatcaac-----ttgttctacaaaatca |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
9282959 |
aagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctccatccacttgtgttgttctacaaaatca |
9282860 |
T |
|
| Q |
450 |
atcattaaatttgcttaattaagttaactaaattgaattagtgaattcaaatatnnnnnnncactataatagaataagaagttct |
534 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9282859 |
atctttaaatttgcttaattaagttaactaaattgaattagtgaattcaaatctaaaaaaacactataatagaataagaagttct |
9282775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 327 - 503
Target Start/End: Complemental strand, 9268511 - 9268335
Alignment:
| Q |
327 |
ttaatcataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtttttgccattgtcacaatagttggaaatagctc |
426 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
9268511 |
ttaatcgtaccaattgcaaagaaccactaagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctc |
9268412 |
T |
|
| Q |
427 |
catcaacttgttctacaaaatcaatcattaaatttgcttaattaagttaactaaattgaattagtgaattcaaatat |
503 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
9268411 |
catccacttgttctacaaaatcaatcattgaatttgcttaattaagtcaactaaattgaatttgtgaattcaaatat |
9268335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 410 - 501
Target Start/End: Original strand, 9223205 - 9223296
Alignment:
| Q |
410 |
atagttggaaatagctccatcaacttgttctacaaaatcaatcattaaatttgcttaattaagttaactaaattgaattagtgaattcaaat |
501 |
Q |
| |
|
||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
9223205 |
atagttggaaatagccccatccactttttgtacaaaatcaatcattaaatttgcttaattaagttaattaaattgaatttgtgaattcaaat |
9223296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9268613 - 9268526
Alignment:
| Q |
1 |
ttatagtgttcaattaaaagtaaattaccttggattttccattaggcatgttttggatgaagcaaccggaaggaagacgatggcctcg |
88 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9268613 |
ttattgtgttcaattaaaatttaattaccttggaagtgccattaggcatgttttggatgaagcaaccggaaggaagacgatggcctcg |
9268526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 237
Target Start/End: Complemental strand, 28599909 - 28599693
Alignment:
| Q |
24 |
attaccttggattttccattaggcatgttttggatgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaatt |
123 |
Q |
| |
|
||||||||||| | ||||||||||||| ||| |||||||| || |||||||||||||| | |||||| | | |||||| || |||| ||||||||| | |
|
|
| T |
28599909 |
attaccttggagtagccattaggcatgtcttgaatgaagcagccagaaggaagacgatgacatcgaaactgaggagcaaattggttgtcatgaggaaaat |
28599810 |
T |
|
| Q |
124 |
catatgaaacatcaactattgcccat---ccttcctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttg |
220 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| ||||| ||| |||| ||||| | ||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
28599809 |
cataggaaacatcaacaattgcccataaaccttgctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttg |
28599710 |
T |
|
| Q |
221 |
caactcttcatacatct |
237 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
28599709 |
caactcctcatacatct |
28599693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 461
Target Start/End: Complemental strand, 28599561 - 28599432
Alignment:
| Q |
332 |
cataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtttttgccattgtcacaatagttggaaatagctccatca |
431 |
Q |
| |
|
||||||||||||| ||||||| | |||| || || ||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
28599561 |
cataccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatagtaggaaatagagccatcc |
28599462 |
T |
|
| Q |
432 |
acttgttctacaaaatcaatcattaaattt |
461 |
Q |
| |
|
||| ||||| |||||||||||| |||||| |
|
|
| T |
28599461 |
actggttctgaaaaatcaatcatgaaattt |
28599432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2049 - 1996
Alignment:
| Q |
1 |
ttatagtgttcaattaaaagtaaattaccttggattttccattaggcatgtttt |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2049 |
ttatagtgttcaattaaaagtaaattaccttggattttccattaggcatgtttt |
1996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 13442866 - 13442938
Alignment:
| Q |
166 |
tacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatctt |
238 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||| ||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
13442866 |
tacagtaacgtaggaagtaggattctctgatagaaacaattggtgacagcctttgcaactcttcatacatctt |
13442938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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