View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_high_9 (Length: 396)
Name: NF18579_high_9
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 36407636 - 36408004
Alignment:
| Q |
11 |
atgaacatcctccagtcctagcttcagagttgaatatagttcttccagtcttacatcaattgcaaccagaccatcattataggatgggaacttgagttct |
110 |
Q |
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| T |
36407636 |
atgaacatcctccagtcctagcttcagagttgaatatagttcttccaatcttacatcaattgcaaccagaccatcattataggatgggaacttgagttct |
36407735 |
T |
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| Q |
111 |
agtcttttccatacttgtgcaataacttcttcaatgagtttagtttcatgtctgcatagaacagaaaccataacatatgatcaagtcataaactaaaatc |
210 |
Q |
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| T |
36407736 |
agtcttttccatacttgtgcaataacttcttcaatgagtttagtttcatgtctgcatagaacagaaaccataacatatgatcaagtcataaactaaaatc |
36407835 |
T |
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| Q |
211 |
atataaaatgaaaagactaatatgcaaggtcagcttacatctgcacctatctatattattacctatatataaaggggatacctaattttggcgttgtcat |
310 |
Q |
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| T |
36407836 |
atataaaatgaaaagactaatatgcaaggtcagcttacatctgcacctatctatattattacctatatataaaggggatacctaattttggcgttgtcat |
36407935 |
T |
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| Q |
311 |
tttttcttctgattttagcctttattgaaactannnnnnnnnctgtcaagtagcctagtggctagaaatt |
380 |
Q |
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| T |
36407936 |
tttttcttctgattttagcctttattgaaacta-ttttttttctgtcaaatagcctagtggctagaaatt |
36408004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 36398854 - 36399058
Alignment:
| Q |
11 |
atgaacatcctccagtcctagcttcagagttgaatatagttcttccagtcttacatcaattgcaaccagaccatcattataggatgggaacttgagttct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36398854 |
atgaacatcctccagtcctagcttcagagttgaatatagttcttccaatcttacatcaattgcaaccagaccatcattataggatgggaacttgagttct |
36398953 |
T |
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| Q |
111 |
agtcttttccatacttgtgcaataacttcttcaatgagtttagtttcatgtctgcatagaacagaaaccataacatatgatcaagtcataaactaaaatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36398954 |
agtcttttccatacttgtgcaataacttcttcaatgagtttagtttcatgtctgcatagaacagaaaccataacatatgatcaagtcataaactaaaatc |
36399053 |
T |
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| Q |
211 |
atata |
215 |
Q |
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|||| |
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| T |
36399054 |
ttata |
36399058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 36399089 - 36399151
Alignment:
| Q |
270 |
tacctatatataaaggggatacctaattttggcgttgtcattttttcttctgattttagcctt |
332 |
Q |
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||||||||||||||||||||||| | |||||| | ||||||||||||| ||||||| |||| |
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| T |
36399089 |
tacctatatataaaggggataccgagttttggtttagtcattttttcttacgattttaccctt |
36399151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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