View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_10 (Length: 380)
Name: NF18579_low_10
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 369
Target Start/End: Complemental strand, 45672021 - 45671670
Alignment:
| Q |
3 |
gcagtttcaaaatgtcaatcaagatttttaatatgatttaatgaaaattgtttaatgtgtgactactttgatcaatgatgtgtaagcaaactggtatgta |
102 |
Q |
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| T |
45672021 |
gcagtttcaaaaggtcaatcaagatttttaatatgatttaatgaaaattgtttaatgtgtgactactttgatcaatgatttgtaagcaaactggtatgta |
45671922 |
T |
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| Q |
103 |
cactgatacacacnnnnnnnnncatcacaagaatcaaaatcagtcacagttgatgctttggtggtgtccacaccatgaattatgtggctgcaaagagtac |
202 |
Q |
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| T |
45671921 |
cactgatacacac---------------aagaatcaaaatcagtcacagttgatgctttggtggtgtccacaccatgaattatgtggctgcaaagattac |
45671837 |
T |
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| Q |
203 |
agatttggataaatgacacgtatttagatgggtttttgtctgcgttatgaagaataagaacaaatgtgtttgtctataaacttctcgtgtcttctggtac |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45671836 |
agatttggataaatgacacgtatttagatgggtttttgtctgcgttatgaagaataagaacaaatgtgtttgtctataaacttctcgtgtcttctggtac |
45671737 |
T |
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| Q |
303 |
agcttgtcttgaatgagaaggaacggagcctaaacatggttgaccctttgtatttaaactcttgatg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45671736 |
agcttgtcttgaatgagaaggaacggagcctaaacatggttgaccctttgtctttaaactcttgatg |
45671670 |
T |
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