View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_11 (Length: 355)
Name: NF18579_low_11
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 4286719 - 4287043
Alignment:
| Q |
17 |
aaatcataaatttgactacatgcaataaactagcacttggtaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataataacacac |
116 |
Q |
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| T |
4286719 |
aaatcataaatttgactacatgcaataaactagcacttggcaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataataacacac |
4286818 |
T |
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| Q |
117 |
aggttttcattcaagattagattgttttatttagtcaagataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagta |
216 |
Q |
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| T |
4286819 |
aggttttcattcaagattagattgttttatttagtcaagataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagta |
4286918 |
T |
|
| Q |
217 |
aacacattttcttaaaacatgattgatgaaagcatgaagaaagtatatatattttaagaagcttcagttacaaacattagagcaaacatatccaaacaac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||| |
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| T |
4286919 |
aacacattttcttaaaacatgattgatgaaagcatgaagaaagtatatatattataagaagcttcaattacaaactttagagcaaacatatccaagaaac |
4287018 |
T |
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| Q |
317 |
actaactaatattcaaagttcaaac |
341 |
Q |
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| T |
4287019 |
actaactaatattcgaagttcaaac |
4287043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 19972170 - 19972224
Alignment:
| Q |
162 |
aatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagta |
216 |
Q |
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| T |
19972170 |
aatgtttctttttatgcttgggaatgaagtgatgctatcaatattagagctagta |
19972224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 19972245 - 19972306
Alignment:
| Q |
202 |
atattagaactagtaaacacattttcttaaaacatgattgatgaaagcatgaagaaagtata |
263 |
Q |
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| T |
19972245 |
atattagagctagtaaatgcgttttctcaaaacatggttgatcaaagcatgaagaaattata |
19972306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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