View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18579_low_12 (Length: 343)

Name: NF18579_low_12
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18579_low_12
NF18579_low_12
[»] chr3 (5 HSPs)
chr3 (151-331)||(30790660-30790839)
chr3 (11-128)||(30790837-30790959)
chr3 (169-208)||(1860184-1860223)
chr3 (111-166)||(35620791-35620846)
chr3 (197-249)||(39021660-39021711)
[»] chr1 (3 HSPs)
chr1 (171-245)||(26631695-26631768)
chr1 (149-211)||(1244273-1244335)
chr1 (171-245)||(10313845-10313918)
[»] chr2 (2 HSPs)
chr2 (174-245)||(865846-865916)
chr2 (176-245)||(6527412-6527480)
[»] chr7 (3 HSPs)
chr7 (154-211)||(21182348-21182408)
chr7 (181-241)||(47451011-47451070)
chr7 (111-166)||(45971656-45971711)
[»] chr6 (2 HSPs)
chr6 (171-245)||(27897956-27898028)
chr6 (171-216)||(20809082-20809127)
[»] chr8 (3 HSPs)
chr8 (178-211)||(42205354-42205387)
chr8 (175-212)||(26514716-26514753)
chr8 (171-215)||(24691921-24691965)
[»] chr4 (3 HSPs)
chr4 (171-216)||(14123716-14123761)
chr4 (174-222)||(24349454-24349502)
chr4 (171-211)||(43072222-43072262)
[»] chr5 (2 HSPs)
chr5 (150-203)||(32056162-32056218)
chr5 (171-211)||(4445367-4445407)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 151 - 331
Target Start/End: Complemental strand, 30790839 - 30790660
Alignment:
Q  151 atatgtttatctctatttcttttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaattttg 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30790839 atatgtttatctctatttcttttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcgtatttgacatcaaattttg 30790740  T
Q  251 acgtctaaatttannnnnnnnnagtattattatgtatccatatttattggttctatgtgggattcaatcaaccaaataagt 331  Q
    |||||| |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790739 acgtct-aatttttttttttttagtattattatgtatccatatttattggttctatgtgggattcaatcaaccaaataagt 30790660  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 30790959 - 30790837
Alignment:
Q  11 cacagaaacactatatttatgttatcctaacaatttactgctagtccatataatcaatcataagcg-----gaccttacagatgataataatactaaaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  30790959 cacagaaacactatatttatgttatcctaacaatttactgctagtccatataatcaatcataagcggaccggaccttacagatgataataatactaaaga 30790860  T
Q  106 aattatatttgaacatcaaaata 128  Q
    |||||||||||||||||||||||    
T  30790859 aattatatttgaacatcaaaata 30790837  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 1860184 - 1860223
Alignment:
Q  169 cttttttatcttctacaacttacacacatttaaaaaatac 208  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  1860184 cttttttatcttctacaactaacacacatttcaaaaatac 1860223  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 35620846 - 35620791
Alignment:
Q  111 tatttgaacatcaaaatacagttactatatgcgacatcgtatatgtttatctctat 166  Q
    ||||||||||||||||||||  ||| ||||| |||| |||||||| ||||||||||    
T  35620846 tatttgaacatcaaaatacaactaccatatgtgacaccgtatatgcttatctctat 35620791  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 39021660 - 39021711
Alignment:
Q  197 tttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaatttt 249  Q
    |||||||||||||||| ||| |||||  ||||| |||||||||||||||||||    
T  39021660 tttaaaaaatacacatgaaaatcaaattacact-atatttgacatcaaatttt 39021711  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 26631695 - 26631768
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 245  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| ||||| | ||||||||||||||    
T  26631695 tttttatattctacaacttacacacattttaaaaatacacgtaaaaatcaaaagacac-cctatttgacatcaaa 26631768  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 1244273 - 1244335
Alignment:
Q  149 gtatatgtttatctctatttcttttttatcttctacaacttacacacatttaaaaaatacaca 211  Q
    ||||||||||| ||||| ||  |||||||||||||||| |||||||  || ||||||||||||    
T  1244273 gtatatgtttacctctagttactttttatcttctacaatttacacattttaaaaaaatacaca 1244335  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 10313845 - 10313918
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 245  Q
    |||||||||| |||||||||||   |||| |||| |||||| |||| ||||| ||||| ||||||||||||||||    
T  10313845 tttttatcttgtacaacttacatgaatttcaaaattacacacaaaaatcaaatgacac-catatttgacatcaaa 10313918  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 865916 - 865846
Alignment:
Q  174 ttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 245  Q
    |||||| ||||||||||||||||||| |||||||| ||||||| ||||| |||| | |||||||||||||||    
T  865916 ttatctactacaacttacacacattttaaaaatacgcataaaaatcaaatgaca-ttatatttgacatcaaa 865846  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 6527412 - 6527480
Alignment:
Q  176 atcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 245  Q
    |||||||||||||| ||  ||||||||||||||||||||||  ||||||||| ||||| | |||||||||    
T  6527412 atcttctacaacttgcatgcatttaaaaaatacacataaaaaccaaaggaca-tcatactcgacatcaaa 6527480  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 21182348 - 21182408
Alignment:
Q  154 tgtttatctctatttctt---ttttatcttctacaacttacacacatttaaaaaatacaca 211  Q
    ||||||||||||| ||||   |||||| |||||||||||| ||||||||||||||||||||    
T  21182348 tgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacaca 21182408  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 47451011 - 47451070
Alignment:
Q  181 ctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacat 241  Q
    ||||||||| |||||| ||||||||||||||||||| ||||| ||||| | ||||||||||    
T  47451011 ctacaacttgcacacaattaaaaaatacacataaaaatcaaatgacac-cgtatttgacat 47451070  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 45971656 - 45971711
Alignment:
Q  111 tatttgaacatcaaaatacagttactatatgcgacatcgtatatgtttatctctat 166  Q
    ||||||||||||||||||||  |||  |||| |||||| |||||||||||||||||    
T  45971656 tatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctat 45971711  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 27898028 - 27897956
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 245  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||| |||||  |||| | ||||||||||||||    
T  27898028 tttttatcttctataatttacacacattta-aaaatacacataaaaatcaaaacacac-cgtatttgacatcaaa 27897956  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 20809127 - 20809082
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacacataaaa 216  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||    
T  20809127 tttttatcttttacaacatacacacatttaaaaaatacacacaaaa 20809082  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 42205387 - 42205354
Alignment:
Q  178 cttctacaacttacacacatttaaaaaatacaca 211  Q
    ||||||||||||||||||||||||||||||||||    
T  42205387 cttctacaacttacacacatttaaaaaatacaca 42205354  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 26514753 - 26514716
Alignment:
Q  175 tatcttctacaacttacacacatttaaaaaatacacat 212  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  26514753 tatcttttacaacttacacacattttaaaaatacacat 26514716  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 24691921 - 24691965
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacacataaa 215  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||    
T  24691921 tttttatcttctacaacaaacacacatttggaaaatacacataaa 24691965  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 14123716 - 14123761
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacacataaaa 216  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||    
T  14123716 tttttatcttctacaacttatacacattttaaaaatacacacaaaa 14123761  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 24349454 - 24349502
Alignment:
Q  174 ttatcttctacaacttacacacatttaaaaaatacacataaaactcaaa 222  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||| |||||    
T  24349454 ttatcttatacaacttatacacattaaaaaaatacacataaaaatcaaa 24349502  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 43072222 - 43072262
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacaca 211  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  43072222 tttttatcttctacagcttacacacatttcaaaaatacaca 43072262  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 32056162 - 32056218
Alignment:
Q  150 tatatgtttatctctat-ttct--tttttatcttctacaacttacacacatttaaaa 203  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||| ||| |||||    
T  32056162 tatatgtttatctctatcttctactttttatcttctacaacttacactcatgtaaaa 32056218  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 4445407 - 4445367
Alignment:
Q  171 tttttatcttctacaacttacacacatttaaaaaatacaca 211  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  4445407 tttttatattctacaacttacaaacatttcaaaaatacaca 4445367  T

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