View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_15 (Length: 314)
Name: NF18579_low_15
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_15 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 11170225 - 11169927
Alignment:
| Q |
16 |
ctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaattaatatgaa |
115 |
Q |
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| T |
11170225 |
ctgctgtccatgcttttatagcaagtggtgcgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaattaatatgaa |
11170126 |
T |
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| Q |
116 |
aggggacctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaaagttatttcg |
215 |
Q |
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| T |
11170125 |
aggggacctcatgggcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaaagttatttcg |
11170026 |
T |
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| Q |
216 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacat |
314 |
Q |
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| T |
11170025 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacat |
11169927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 11209047 - 11208757
Alignment:
| Q |
16 |
ctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaattaatatgaa |
115 |
Q |
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| T |
11209047 |
ctgctgtccatgcttttatagcaagtggtgagatttgtgaaaagtttcaagatttgacattgagggaagtcaatcctttgtcccttggaattaatatcaa |
11208948 |
T |
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| Q |
116 |
aggggacctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaa-agttatttc |
214 |
Q |
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| T |
11208947 |
agggggcctcatgagcgtaataattcctaggaataccacgattcctaccaatatggaagatgtatacaccaccagtgaacccaaccaaaatagtt-tatc |
11208849 |
T |
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| Q |
215 |
gattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtg |
306 |
Q |
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| T |
11208848 |
aatttccgtttatgagggtgagaggcaaacaactaaggacaacaacttgctaggatcttttgagtttgaaattcctccatgtccaaaaggtg |
11208757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 11275609 - 11275326
Alignment:
| Q |
16 |
ctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaattaatatgaa |
115 |
Q |
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| T |
11275609 |
ctgctatccatgcttttatattgagtggtgagctttgtgaaaagtttcaagatttgacattgagggaagttaatccattgtccattggaattaaaacaca |
11275510 |
T |
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| Q |
116 |
aggggacctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaa-aagtcattcaccacagctgaagacaacctaaaagttatttc |
214 |
Q |
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| T |
11275509 |
atggggaatcatgaaaacaatatttcccaggaataccatgattcctaccaacaaggaagaagt-attcaccacaactatacctaaccaaaaatttgttgc |
11275411 |
T |
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| Q |
215 |
gattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtcca |
299 |
Q |
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| T |
11275410 |
aattagtatttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtcca |
11275326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 11196189 - 11196117
Alignment:
| Q |
220 |
atgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctcc |
292 |
Q |
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| T |
11196189 |
atgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
11196117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 11319818 - 11319866
Alignment:
| Q |
39 |
agtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtca |
87 |
Q |
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| T |
11319818 |
agtggtgagttttgtgaaaagtttcaagatttgacattgagggaagtca |
11319866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 11155746 - 11155697
Alignment:
| Q |
216 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgct |
265 |
Q |
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| T |
11155746 |
attcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgct |
11155697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 11132471 - 11132411
Alignment:
| Q |
209 |
tatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctagga |
269 |
Q |
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| T |
11132471 |
tattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctagga |
11132411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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