View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_17 (Length: 293)
Name: NF18579_low_17
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 44880978 - 44881249
Alignment:
| Q |
7 |
tgagatgaagatttttgtgatgttaattctgaagaaactgttagaggctggtttgggaggagtgtgtttgaaggttgagaaaaactctgccatatagggt |
106 |
Q |
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| T |
44880978 |
tgagatgaagattttggtgatgttaattctgaagaaactgttagaggctggtttgggaggagtgtgtttgaaggttgagaaaaactctgccatatagggt |
44881077 |
T |
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| Q |
107 |
ggttatttatgttgtgaaggatgaagttgcctgattctgacatggttgctgattctacattagcatttgaagtgtttgtggcccatatggtgannnnnnn |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881078 |
ggttatttatgttgtgaaggatgaagttgcctgattctgacatggttgctgattctacattagcatttgaagtgtttgtggcccatatggtgattttttt |
44881177 |
T |
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| Q |
207 |
gtccatgagaatgaggtttcctgttgtgtcaagctccaaaattgcttcatgagatataggagagtttctact |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881178 |
gtccatgagaatgaggtttcctgttgtgtcaagctccaaaattgcttcatgagatataggagagtttctact |
44881249 |
T |
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