View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18579_low_2 (Length: 647)

Name: NF18579_low_2
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18579_low_2
NF18579_low_2
[»] chr3 (8 HSPs)
chr3 (18-331)||(49187698-49188011)
chr3 (390-637)||(49188070-49188317)
chr3 (439-637)||(49212972-49213170)
chr3 (416-637)||(49191833-49192053)
chr3 (436-637)||(49202958-49203159)
chr3 (439-637)||(49208132-49208330)
chr3 (138-253)||(49202535-49202650)
chr3 (128-224)||(49191354-49191451)
[»] chr1 (5 HSPs)
chr1 (396-637)||(37030590-37030828)
chr1 (439-637)||(32592496-32592694)
chr1 (439-564)||(31527272-31527397)
chr1 (420-501)||(51824272-51824352)
chr1 (507-633)||(51824717-51824843)
[»] chr8 (1 HSPs)
chr8 (439-637)||(26756496-26756696)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 49187698 - 49188011
Alignment:
Q  18 aacttctcattgtactggcgagggactctgacttttgggaaacactcaatggccaactatgatcctatactcatgtgtatatctttgatcctatataaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187698 aacttctcattgtactggcgagggactctgacttttgggaaacactcaatggccaactatgatcctatactcatgtgtatatctttgatcctatataaaa 49187797  T
Q  118 catttatgacgacaaaactaagagaacaaatcaagtagcctaattatttaaagaatgcaaatttactattccatataacataatcaataatgaactgaat 217  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187798 catttatcacgacaaaactaagagaacagatcaagtagtctaattatttaaagaatgcaaatttactattccatataacataatcaataatgaactgaat 49187897  T
Q  218 agagtattttaaaaattagaatatctttacattagtccacaaaagttgtctttaaaatactccattagaatgtaattagtgttatcaaagaggtgccaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187898 agagtattttaaaaattagaatatctttacattagtccacaaaagttgtctttaaaatactccattagaatgtaattagtgttatcaaagaggtgccaaa 49187997  T
Q  318 attaaatcacagta 331  Q
    ||||||||||||||    
T  49187998 attaaatcacagta 49188011  T

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Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 390 - 637
Target Start/End: Original strand, 49188070 - 49188317
Alignment:
Q  390 cagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagcttt 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49188070 cagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagcttt 49188169  T
Q  490 aagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacc 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188170 aagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacc 49188269  T
Q  590 tgagccgccttggtccaagccgctttcttcttagccaactcagaatta 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188270 tgagccgccttggtccaagccgctttcttcttagccaactcagaatta 49188317  T

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Target: chr3; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 439 - 637
Target Start/End: Original strand, 49212972 - 49213170
Alignment:
Q  439 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 538  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||    
T  49212972 actaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgc 49213071  T
Q  539 aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 637  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || |||||||| ||||||    
T  49213072 aactcagcttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtccaagcagccttctttttggccaactccgaatta 49213170  T

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Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 416 - 637
Target Start/End: Original strand, 49191833 - 49192053
Alignment:
Q  416 tatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcat 515  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||    
T  49191833 tatatatatttgcat-gtactaaactaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcat 49191931  T
Q  516 tcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgcttt 615  Q
    |||||||||| ||||||||||| |||||||| ||||||||||| || || ||    ||||| ||||| ||||| ||||||||||| ||||||||||||||    
T  49191932 tcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtccaagccgcttt 49192031  T
Q  616 cttcttagccaactcagaatta 637  Q
    |||||||||||| |||||||||    
T  49192032 cttcttagccaattcagaatta 49192053  T

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Target: chr3; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 436 - 637
Target Start/End: Original strand, 49202958 - 49203159
Alignment:
Q  436 taaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcacct 535  Q
    |||||||||||| |||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||| ||||||||||| || |||||||||    
T  49202958 taaactaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcacct 49203057  T
Q  536 tgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaat 635  Q
    || |||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||    
T  49203058 tgtaactcagcatcccttagagccacggccttcttcgcctcaacttcagccacctgagccgccttagtccaagctgccttcttcttagccaactcagaat 49203157  T
Q  636 ta 637  Q
    ||    
T  49203158 ta 49203159  T

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Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 439 - 637
Target Start/End: Original strand, 49208132 - 49208330
Alignment:
Q  439 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 538  Q
    ||||||||| || ||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||    
T  49208132 actaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgc 49208231  T
Q  539 aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 637  Q
    |||||||||||||||||||| || || ||    ||||| |  |||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||||    
T  49208232 aactcagcttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtccaagcagctttcttcttagccaactcggaatta 49208330  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 49202535 - 49202650
Alignment:
Q  138 agagaacaaatcaagtagcctaattatttaaagaatgcaaatttactattccatataacataatcaataatgaactgaatagagtattttaaaaattaga 237  Q
    ||||||| ||||||  || | ||||||||||| ||||||| || |||  |||||||| || |||||||||| || |||||| | ||| ||||||| ||||    
T  49202535 agagaactaatcaaacagtccaattatttaaaaaatgcaacttgacttctccatatagcagaatcaataatcaattgaataaactatattaaaaaataga 49202634  T
Q  238 atatctttacattagt 253  Q
    ||||||||||||||||    
T  49202635 atatctttacattagt 49202650  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 49191354 - 49191451
Alignment:
Q  128 gacaaaactaagagaacaaatcaagtagcctaattatttaaagaa-tgcaaatttactattccatataacataatcaataatgaactgaatagagtat 224  Q
    |||||||  ||||||||||||||||||| | | ||||||||| || ||||| || |||| ||||||||||| |||||||||| || |||||| |||||    
T  49191354 gacaaaaacaagagaacaaatcaagtagtccagttatttaaaaaaatgcaacttgactactccatataacagaatcaataatcaattgaataaagtat 49191451  T

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Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 396 - 637
Target Start/End: Original strand, 37030590 - 37030828
Alignment:
Q  396 ataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagctt 495  Q
    ||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||    
T  37030590 ataaaaaatgaatcaagttatatatat--ttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagctt 37030686  T
Q  496 ctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagcc 595  Q
     ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  37030687 ttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagcc 37030786  T
Q  596 gccttggtccaagccgctttcttcttagccaactcagaatta 637  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37030787 gccttggtccaagccgctttcttcttagccaactcagaatta 37030828  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 439 - 637
Target Start/End: Complemental strand, 32592694 - 32592496
Alignment:
Q  439 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 538  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  32592694 actaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 32592595  T
Q  539 aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 637  Q
    |||||||||||||||||||| ||||| ||    || |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  32592594 aactcagcttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtccaagccgctttcttcttcgccaactcagaatta 32592496  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 439 - 564
Target Start/End: Original strand, 31527272 - 31527397
Alignment:
Q  439 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 538  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  31527272 actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 31527371  T
Q  539 aactcagcttcccttagagcaacagc 564  Q
    |||||||||||||||||||| |||||    
T  31527372 aactcagcttcccttagagccacagc 31527397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 420 - 501
Target Start/End: Original strand, 51824272 - 51824352
Alignment:
Q  420 tatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagt 501  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51824272 tatatttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagt 51824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 507 - 633
Target Start/End: Original strand, 51824717 - 51824843
Alignment:
Q  507 tcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtcca 606  Q
    |||| ||||||||| |||| || ||||||||||||||||||||||||||| | ||||  ||    ||||| |||| |||||| ||||| ||||| |||||    
T  51824717 tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca 51824816  T
Q  607 agccgctttcttcttagccaactcaga 633  Q
    ||||||||||||| | |||||||||||    
T  51824817 agccgctttcttcatcgccaactcaga 51824843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 439 - 637
Target Start/End: Original strand, 26756496 - 26756696
Alignment:
Q  439 actaaccttggtttcatattgaacactagctttgctgagta---aatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcacct 535  Q
    ||||||||||||||||||| | ||||||||||| || | ||   | |||| ||||||||||||||| |||||||| |||||||||||||| || ||||||    
T  26756496 actaaccttggtttcatat-gtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcacct 26756594  T
Q  536 tgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaat 635  Q
    ||||||||||||||||| || || ||||| ||    ||||| |||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||    
T  26756595 tgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaactcggaat 26756694  T
Q  636 ta 637  Q
    ||    
T  26756695 ta 26756696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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