View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_20 (Length: 254)
Name: NF18579_low_20
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41025909 - 41025674
Alignment:
| Q |
1 |
caacaactcctaattattttagtaatcatcatggatagtttatgttggctgagacgtcgtgaaaatgtgctagacactctctcatcaaagggaagtttgt |
100 |
Q |
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| T |
41025909 |
caacaactcctaattatttcggtaatcatcatggatagtttatgttggctgagacgtcgtgaaaatgtgctagacactctctcatcgaagggaagtttgt |
41025810 |
T |
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| Q |
101 |
tgcattatttgagtcgatga-gatagtgtacagtaaagacgttgatcgtgttgtgtttgagagtgattctcaaattttactaaatgttgtttacattaat |
199 |
Q |
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|||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41025809 |
tgcattatttgagttgatgaggatagtgtccagtaaagacgttgctcgtgttgtgtttgagagtgattctcaaattttactaaatgttgtttacattaat |
41025710 |
T |
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| Q |
200 |
aattaaagcttactttaatgctattgtttctagtat |
235 |
Q |
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||| | ||||||||||||| ||||||||||||||| |
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| T |
41025709 |
gattgaggcttactttaatgttattgtttctagtat |
41025674 |
T |
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