View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_22 (Length: 240)
Name: NF18579_low_22
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39691421 - 39691646
Alignment:
| Q |
1 |
tttgatttgcatggctggacgcaccaatcggggttcttgtttacaagtattagttgcgtaatacacatgctaatttcaca---tagtatttattttttga |
97 |
Q |
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| T |
39691421 |
tttgatttgaatggctggacgcaccaatcggggttcttgtttacaattattagttgcgtaatacacatgctaatttcacaaagtagtatttattttttga |
39691520 |
T |
|
| Q |
98 |
tagaacaaagtagtaattgtttaatata-tataatannnnnnnaagagaaaattgttacgataataatttacaagtataccatttgcttcaatttgtttc |
196 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691521 |
tagaacaaagtagtaattgtttaatataatataatatttttttaagagaaaattgttacgataataatttacaagtataccatttgcttcaatttgtttc |
39691620 |
T |
|
| Q |
197 |
ttaacttattctaaccaatacgcatt |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39691621 |
ttaacttattctaaccaatacgcatt |
39691646 |
T |
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