View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_23 (Length: 236)
Name: NF18579_low_23
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 9275965 - 9275749
Alignment:
| Q |
1 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggctcattagtttccataagaaaaatcagctcttgcattgcatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9275965 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggctcattagtttccataagaaaaatcagctcttgcattgcatttgt |
9275866 |
T |
|
| Q |
101 |
agcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttccagtgtatccagctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9275865 |
agcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttccagtgtatccagctgca |
9275766 |
T |
|
| Q |
201 |
atgctagatactctaac |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
9275765 |
atgctagatactctaac |
9275749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 9282646 - 9282430
Alignment:
| Q |
1 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggctcattagtttccataagaaaaatcagctcttgcattgcatttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282646 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggctcattagtttccataagaaaaatcagctcttgcattgcatttgt |
9282547 |
T |
|
| Q |
101 |
agcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttccagtgtatccagctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282546 |
agcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttccagtgtatccagctgca |
9282447 |
T |
|
| Q |
201 |
atgctagatactctaac |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
9282446 |
atgctagatactctaac |
9282430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 9293617 - 9293401
Alignment:
| Q |
1 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggctcattagtttccataagaaaaatcagctcttgcattgcatttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293617 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggctcattagtttccataagaaaaatcagctcttgcattgcatttgt |
9293518 |
T |
|
| Q |
101 |
agcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttccagtgtatccagctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293517 |
agcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttccagtgtatccagctgca |
9293418 |
T |
|
| Q |
201 |
atgctagatactctaac |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
9293417 |
atgctagatactctaac |
9293401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 9262772 - 9262660
Alignment:
| Q |
72 |
agaaaaatcagctcttgcattgcatttgtagcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatg |
171 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||||||||| |||||||||||||| |
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| T |
9262772 |
agaaaaaccagctcttgcattgcatttgtagcaatgtcaaacatgagtgacttttccttattagagagacaagcaggttggtaagaaacatttggcaatg |
9262673 |
T |
|
| Q |
172 |
ttgatgaacttcc |
184 |
Q |
| |
|
||||||||||||| |
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| T |
9262672 |
ttgatgaacttcc |
9262660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 9224204 - 9224287
Alignment:
| Q |
100 |
tagcaatgtcaaacattagtgatttttccttatgagagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttc |
183 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9224204 |
tagcaatgtcaaacatgagtgatttttccatatcagagagaccagcaggttggtaagaaacatttggcaatgttgatgaacttc |
9224287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9268176 - 9268118
Alignment:
| Q |
1 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggctca |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
9268176 |
aggtttcaaggttaagagtatctcttccatcagtgtttgatttcatccaaagaggctca |
9268118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9263897 - 9263841
Alignment:
| Q |
1 |
aggtttcaaggttaagagtatctcttccattattgtttgatttcatccaaagaggct |
57 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
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| T |
9263897 |
aggtttcaaggttatgagtatctcttccatcaatgtttgatttcatccaaagaggct |
9263841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 9267305 - 9267262
Alignment:
| Q |
72 |
agaaaaatcagctcttgcattgcatttgtagcaatgtcaaacat |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9267305 |
agaaaaaccagctcttgcattgcatttgtagcaatgtcaaacat |
9267262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 9267192 - 9267156
Alignment:
| Q |
181 |
ttccagtgtatccagctgcaatgctagatactctaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
9267192 |
ttccagtgtatccagctgcaatgctagatactctaac |
9267156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 9262636 - 9262600
Alignment:
| Q |
181 |
ttccagtgtatccagctgcaatgctagatactctaac |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
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|
| T |
9262636 |
ttccagtgtatccagctgcaatactagatactctaac |
9262600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 9223458 - 9223487
Alignment:
| Q |
1 |
aggtttcaaggttaagagtatctcttccat |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
9223458 |
aggtttcaaggttaagagtatctcttccat |
9223487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 28599201 - 28599052
Alignment:
| Q |
35 |
gtttgatttcatccaaagaggctcattagtttccataagaaaaatcagctcttgcattgcatttgtagcaatgtcaaacattagtgatttttccttatga |
134 |
Q |
| |
|
||||||||||||||| |||||||||||||| | || ||| ||||| ||||| ||||||||||| ||||||||| |||| || || |||||| | | | |
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| T |
28599201 |
gtttgatttcatccacagaggctcattagtctgcaaaagcctaatcatctcttccattgcatttgatgcaatgtcagacatgagagacttttccatgtca |
28599102 |
T |
|
| Q |
135 |
gagagaccagcaggttggtaaggaacatttggcaatgttgatgaacttcc |
184 |
Q |
| |
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|| |||| ||| ||||||||||||| ||| ||| |||||||||||||| |
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|
| T |
28599101 |
gaaagacaagctggttggtaaggaatattctgcatagttgatgaacttcc |
28599052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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