View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_24 (Length: 230)
Name: NF18579_low_24
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 43554334 - 43554563
Alignment:
| Q |
1 |
catagaaagtcaacagtttagaatatatcttacataaactatatagaatttccaatccatcaccttattattagtgattaaggatgagcttaatttcatt |
100 |
Q |
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| T |
43554334 |
catagaaagtcaacagtttaggatatatcttacataaactatatagaatttccaatccatcaccttattattagtgattaaggatgagcttaatttcatt |
43554433 |
T |
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| Q |
101 |
tttggtccacaaatattaacattgtgcaattttagtcctcaggtatctcaatttctacaatcaaattccgctgtctattaaccatctaatttttaaccct |
200 |
Q |
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| T |
43554434 |
tttggtccacaaatattaacattgtgcaattttagtccttaggtatctcaatttctacaatcaaattccgctgtctattaaccatctaatttttaaccct |
43554533 |
T |
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| Q |
201 |
ataggctacgtgagtcttagttgacgttga |
230 |
Q |
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| T |
43554534 |
ataggctacgtgagtcttagttgacgttga |
43554563 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 43550333 - 43550413
Alignment:
| Q |
1 |
catagaaagtcaacagtttagaatatatcttacataaactatatagaatttccaatccatcaccttattattagtgattaa |
81 |
Q |
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|||||| | ||||| |||||| | ||| ||||||| | ||||||| |||| || |||||||||||||||||||||||||| |
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| T |
43550333 |
catagacaatcaaccgtttaggagataacttacatcagctatataagattttcagtccatcaccttattattagtgattaa |
43550413 |
T |
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