View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18579_low_25 (Length: 228)

Name: NF18579_low_25
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18579_low_25
NF18579_low_25
[»] chr1 (9 HSPs)
chr1 (1-216)||(10991265-10991481)
chr1 (62-145)||(11025807-11025890)
chr1 (61-151)||(10992350-10992440)
chr1 (61-145)||(10930146-10930230)
chr1 (62-145)||(11040510-11040593)
chr1 (156-210)||(14650165-14650218)
chr1 (156-210)||(14659956-14660009)
chr1 (156-210)||(16100636-16100689)
chr1 (156-210)||(47050764-47050817)
[»] chr4 (2 HSPs)
chr4 (156-210)||(54352095-54352149)
chr4 (156-210)||(4763744-4763797)
[»] chr3 (4 HSPs)
chr3 (156-202)||(11200596-11200642)
chr3 (156-210)||(19434898-19434951)
chr3 (156-210)||(28103707-28103760)
chr3 (181-210)||(6911605-6911634)
[»] scaffold0406 (1 HSPs)
scaffold0406 (156-210)||(3545-3598)
[»] chr8 (1 HSPs)
chr8 (156-210)||(18982312-18982365)
[»] chr6 (5 HSPs)
chr6 (156-210)||(25478508-25478561)
chr6 (156-210)||(27527133-27527186)
chr6 (156-210)||(28040592-28040645)
chr6 (156-210)||(33055531-33055584)
chr6 (156-210)||(33062914-33062967)
[»] chr5 (1 HSPs)
chr5 (156-210)||(5519721-5519774)
[»] chr2 (2 HSPs)
chr2 (156-210)||(2588046-2588099)
chr2 (156-210)||(45331892-45331945)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10991265 - 10991481
Alignment:
Q  1 attctgtattttctttattttaattatagcatgtaagaaaatcannnnnnnnn-aaattgtttttcataaatgcagggtcaattttaggatcaatgtttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  10991265 attctgtattttctttattttaattatagcatgtaagaaaatcattttttttttaaattgtttttcataaatgcagggtcaattttaggatcaatgtttt 10991364  T
Q  100 ttatcttgctcaccgctgcagtctatcatatttacgactcttacattctgaaaggcaatcaaaataatcaaattcaactataatataaaatcatattcaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10991365 ttatcttgctcaccgctgcagtctatcatatttacgactcttacattctgaaaggcaatcaaaataatcaaattcaactataatataaaatcatattcaa 10991464  T
Q  200 tttcataatacgagaat 216  Q
    |||||||||||||||||    
T  10991465 tttcataatacgagaat 10991481  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 11025807 - 11025890
Alignment:
Q  62 tttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacat 145  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |  | || | |||| |||||||| |||||||||||    
T  11025807 tttcataaatgcaggatcaattttaggatcattgttttttatcttgttgattggtggaatctaccatatttatgactcttacat 11025890  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 10992350 - 10992440
Alignment:
Q  61 ttttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacattctgaa 151  Q
    ||||||||||| |||| |||||| |||||||  |||||||| ||||| | |||| ||||||||| ||  |||| ||||||||||| |||||    
T  10992350 ttttcataaatccaggatcaattctaggatcgctgttttttgtcttgttaaccggtgcagtctaccacgtttatgactcttacatactgaa 10992440  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 10930146 - 10930230
Alignment:
Q  61 ttttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacat 145  Q
    |||||||||||||||| ||||||||||| ||  | |||||| ||||| | || | |||| |||| |||||||| |||||||||||    
T  10930146 ttttcataaatgcaggatcaattttaggttcgttattttttgtcttgttgactggtgcaatctaccatatttatgactcttacat 10930230  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 11040510 - 11040593
Alignment:
Q  62 tttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacat 145  Q
    ||||||||||||||| ||||||||||||||  ||||||| |||||| | |  | || |||||  |||||||| |||||||||||    
T  11040510 tttcataaatgcaggatcaattttaggatcgttgtttttcatcttgttgattggtggagtcttccatatttatgactcttacat 11040593  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 14650218 - 14650165
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  14650218 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 14650165  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 14660009 - 14659956
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  14660009 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 14659956  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 16100689 - 16100636
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  16100689 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 16100636  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 47050764 - 47050817
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  47050764 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 47050817  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 54352095 - 54352149
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  54352095 aatcaacataatcaaattcaactataatataaaatcaaattcaatttaataatac 54352149  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 4763744 - 4763797
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  4763744 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 4763797  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 11200642 - 11200596
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaattt 202  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||||    
T  11200642 aatcaaaataatcaacttcaaatagaatataaaatcatattcaattt 11200596  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 19434951 - 19434898
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  19434951 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 19434898  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 28103760 - 28103707
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  28103760 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 28103707  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 6911605 - 6911634
Alignment:
Q  181 aatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||||||||||||||||||    
T  6911605 aatataaaatcatattcaatttcataatac 6911634  T

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Target: scaffold0406 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 3598 - 3545
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  3598 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 3545  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 18982365 - 18982312
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  18982365 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 18982312  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 25478508 - 25478561
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  25478508 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 25478561  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 27527186 - 27527133
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  27527186 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 27527133  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 28040645 - 28040592
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  28040645 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 28040592  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 33055584 - 33055531
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  33055584 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 33055531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 33062967 - 33062914
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  33062967 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 33062914  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 5519721 - 5519774
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||| |||||  | ||||||||| ||||||||||||||||||||    
T  5519721 aatcaaaataatcaa-ttcaaagaaaatataaaaccatattcaatttcataatac 5519774  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 2588099 - 2588046
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  2588099 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 2588046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 45331945 - 45331892
Alignment:
Q  156 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatac 210  Q
    ||||||||||||||  |||||  | ||||||||||||||||||||||||||||||    
T  45331945 aatcaaaataatcac-ttcaaagaaaatataaaatcatattcaatttcataatac 45331892  T

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