View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18579_low_26 (Length: 226)
Name: NF18579_low_26
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_26 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 43555101 - 43554881
Alignment:
| Q |
6 |
atgttaaggtcttaatgttgcttttagaagtcaatcccacagctgcttgcaagcttaatcctagttgtaaaagtgcnnnnnnngtggcttgtagccatgg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
43555101 |
atgttaaggtcttaatgttgcttttagaagtcaatcccacagctgcttgcaagcttaatcctacttgtaaaagtgctttttttgtggcttgtagccatgg |
43555002 |
T |
|
| Q |
106 |
tcatcttgacttggtaaacctcttgttgaatctatctgagattgtggagccaggattggcagggtttgatcaagcctgttttcatattgctgcatcaaga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43555001 |
tcatcttgacttggtaaacctcttgttgaatctatctgagattgttgagccaggattggcagggtttgatcaagcctgttttcatattgctgcatcaaga |
43554902 |
T |
|
| Q |
206 |
ggccacacaggtgaaaataaa |
226 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43554901 |
ggccacacaggtgaaaataaa |
43554881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 43550785 - 43550573
Alignment:
| Q |
6 |
atgttaaggtcttaatgttgcttttagaagtcaatcccacagctgcttgcaagcttaatcctagttgtaaaagtgcnnnnnnngtggcttgtagccatgg |
105 |
Q |
| |
|
|||| ||||| || ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||||| ||||| |
|
|
| T |
43550785 |
atgtcaaggttttgatgttgcttctggaagtcaatccaacagctgcttgcaagcttaatcctacttgtaaaagtgcttttcttgtagcttgtagtcatgg |
43550686 |
T |
|
| Q |
106 |
tcatcttgacttggtaaacctcttgttgaatctatctgagattgtggagccaggattggcagggtttgatcaagcctgttttcatattgctgcatcaaga |
205 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| || || | | ||||||||||||||||| ||||| ||| |||||||| |||| |
|
|
| T |
43550685 |
tcatcttgacttggtgaacctcttgttgaatctatctgagattgtggggcaagaagtagcagggtttgatcaagcttgtttccatgttgctgcagtaaga |
43550586 |
T |
|
| Q |
206 |
ggccacacaggtg |
218 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
43550585 |
gggcacacaggtg |
43550573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University