View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_3 (Length: 646)
Name: NF18579_low_3
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_3 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 518; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Complemental strand, 29612865 - 29612236
Alignment:
| Q |
17 |
aatgtgaagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |
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| T |
29612865 |
aatgtgaagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaaaatcagcatccaattgatggtccacagttgaaccacaaggcaacc |
29612766 |
T |
|
| Q |
117 |
taggaaataagcaaatatgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
29612765 |
taggaaataagcaaatatgcctatttcaaatccaaacttgatcagttttgacaagcttaaagacatcaaagcaaatgcagcattcgaaactaggctcaat |
29612666 |
T |
|
| Q |
217 |
atttcaggtttcccattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatatt |
316 |
Q |
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||||||||||| || |||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29612665 |
atttcaggtttaccgttcacagccttgtcgtaatagaatgagtacactgagatgatcatcaaaactgcaaagcttatgtaagtttttagttgagcatatt |
29612566 |
T |
|
| Q |
317 |
ttgtggagggtgagagctgctttacatacaatatggtgctaaggatagccaaggagaacaccacatacagagagattttgaaaatgttccatcttccaat |
416 |
Q |
| |
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||||||| ||||||| |||||||||| ||||||||||| ||| |||||||||||| ||||| |||||||||||| |||| |||||||||||||||||| |
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| T |
29612565 |
ttgtggatggtgagaactgctttacaaacaatatggtggtaaagatagccaaggaaaacactccatacagagagaacttgacaatgttccatcttccaat |
29612466 |
T |
|
| Q |
417 |
taaacgattgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctccataatgcgttgccactagaaaccttc |
516 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29612465 |
taaacgattgaaagaagggctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctccaaaatgcgttgccactagaaaccttc |
29612366 |
T |
|
| Q |
517 |
catgaaatctcaatatctcccacaacattctgaaaattctgcaatataacaagaattcagtaatgtttgccatgtgtttgtatgaggggattttatgacc |
616 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29612365 |
gatgaaatctgaatatctcccacaacattctgaaaattctgcaatataacaagaattcagtaatgtttgccatgtgtttgtatgaggggattttatgacc |
29612266 |
T |
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| Q |
617 |
taatatatgtaatttaaaaaagtgattcac |
646 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
29612265 |
taatatatgtaatttaaaaaagtgattcac |
29612236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 491
Target Start/End: Complemental strand, 29525076 - 29524602
Alignment:
| Q |
17 |
aatgtgaagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacc |
116 |
Q |
| |
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|||| ||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29525076 |
aatgcgaagacgaatgcataacaaagagcgggcaaccaaagattatagcaaccgaaatcagcatccaattgatggtccacagttgaactgctaggcaacc |
29524977 |
T |
|
| Q |
117 |
taggaaataagcaaatatgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaat |
216 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
29524976 |
taggaaataagaaaatatgcctatttcaaatccaaacctgatcagtttggacaagcttaaggatgtcaaagcaaatgcagcattcgaaactatactcaat |
29524877 |
T |
|
| Q |
217 |
atttcaggtttcccattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatatt |
316 |
Q |
| |
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|||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||| |||| |||| | ||||| ||| ||||| |
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| T |
29524876 |
atttcaggtttcccgttcacagccttgtcgtaatagaatgagtacactgagatgatcatcaaaactgtgaagcccgtgtagggttttatatgaccatatc |
29524777 |
T |
|
| Q |
317 |
ttgtggagggtgagagctgctttacatacaatatggtgctaaggatagccaaggagaacaccacatacagagagattttgaaaatgttccatcttccaat |
416 |
Q |
| |
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|||||| | ||||| | |||||||| |||| ||||| ||| |||| ||||||| |||||| |||||||| ||| |||| | |||||||| ||||||| |
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| T |
29524776 |
gtgtggatgttgagaacggctttacaaacaacatggtagtaaagataaccaaggaaaacaccccatacagaaagaacttgagagtgttccattttccaat |
29524677 |
T |
|
| Q |
417 |
taaacgattgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctcca |
491 |
Q |
| |
|
||||||||||||||| ||||||||| || ||| |||||||| | |||||||||||||| ||||||| |||||| |
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| T |
29524676 |
gaaacgattgaaagaatggctctgagcattacataataggcctactacacttgacacaattccaactattctcca |
29524602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 492
Target Start/End: Original strand, 29474933 - 29475402
Alignment:
| Q |
23 |
aagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacctaggaa |
122 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||| | ||||| || || | |||||| |||||||| |||||||||| | | |||||||| ||| |
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| T |
29474933 |
aagacgaatgcataacagaaagcggacaaccaaagaaaagtgcaacaaaaataaacatccagttgatggttaacagttgaactgtaaagcaacctaagaa |
29475032 |
T |
|
| Q |
123 |
ataagcaaatatgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttca |
222 |
Q |
| |
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||||| |||| || || ||||| ||||| || |||||||| || ||||| || | |||||||||||||||||| ||||||||||||||||||||| |
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| T |
29475033 |
ataagagaatacaccaatctcaaacccaaagttaatcagtttgtgtaaacttaatgaaaccaaagcaaatgcagcatttgaaactatactcaatatttca |
29475132 |
T |
|
| Q |
223 |
ggtttcccattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtgg |
322 |
Q |
| |
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||||| ||||||| ||| ||| || | |||| ||||||||||||||||| |||||| |||||| ||||||||| |||||| ||| |||| |
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| T |
29475133 |
ggttttccattcacagctcggtcatagaaaaatgcgtacactgagatgatcatcaaaacgagaaagctcgagtaagttttgagttgaacatggcgagtgg |
29475232 |
T |
|
| Q |
323 |
agggtgagagctgctttacatacaatatggtgctaaggatagccaaggagaacaccacatacagagagattttgaaaatgttccatcttccaattaaacg |
422 |
Q |
| |
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|||| ||| ||| || ||||||||||| | | |||||| ||||| |||||| |||| ||| |||| | |||| ||| || |||||||||| || |
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| T |
29475233 |
tacgtgaagactgttttgcaaacaatatggtggtgaagatagctaaggacaacaccccataaagaaagatctggaaagctttcaattttccaattaatcg |
29475332 |
T |
|
| Q |
423 |
attgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctccat |
492 |
Q |
| |
|
|||||||||||||||| ||| |||||| | || || | || |||||||| ||||||||||| ||||||| |
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|
| T |
29475333 |
attgaaagaagggctcagagcataacaaaccagaccgactatacttgacataaggccaactactctccat |
29475402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 29526611 - 29526892
Alignment:
| Q |
34 |
ataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacctaggaaataagcaaata |
133 |
Q |
| |
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||||||||||| ||||||| ||||||| ||||| || |||| ||||| ||||||||| ||||||||| | | |||||||| |||||||| || |
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| T |
29526611 |
ataacaaagagcagacaaccgtagattatggcaacaaaaatcaatatccagttgatggtcaacagttgaattgtaaagcaacctaagaaataagagaacc |
29526710 |
T |
|
| Q |
134 |
tgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttcaggtttcccatt |
233 |
Q |
| |
|
|| || ||||| ||||| || | ||||| ||||||||| |||| || || ||||||||| || ||||||| ||||| ||| || ||||| ||||| |
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|
| T |
29526711 |
caccaatctcaaacccaaagttagtgagtttgtgcaagcttaaggacaccatagaaaatgcagcgtttgaaactacactcagtatgtcgggttttccatt |
29526810 |
T |
|
| Q |
234 |
cagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatat |
315 |
Q |
| |
|
|| ||| ||||||| ||||||| |||||||||||||||| ||||||||||||| | || ||||||| |||||| ||||| |
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| T |
29526811 |
caaagctctgtcgtagaagaatgaatacactgagatgatcatcaaaactgcaaagagtgtgcaagttttgagttgaacatat |
29526892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 168 - 491
Target Start/End: Original strand, 29528751 - 29529077
Alignment:
| Q |
168 |
caagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttcaggtttcccattcagggctttgtcgtaatagaatgagtacactgag |
267 |
Q |
| |
|
||||||||| |||| ||||||||| | ||| || ||||||| ||| | ||| | |||||| ||||| | ||| ||||||| ||||||||||||| || |
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| T |
29528751 |
caagcttaatgacaccaaagcaaacgaagcgtttgaaactacactaagtatgttaggttttccattgacagctctgtcgtagacgaatgagtacacttag |
29528850 |
T |
|
| Q |
268 |
atgatcagcaaaactgcaaagcttatgtaagtttttag---ttgagcatattttgtggagggtgagagctgctttacatacaatatggtgctaaggatag |
364 |
Q |
| |
|
||||||| |||||| |||||| || || ||||||||| |||||||| || | ||| |||| ||||||| || |||||| |||| ||| ||| |
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|
| T |
29528851 |
atgatcaccaaaaccgcaaagattgtgcaagtttttatgaattgagcatgttgtttgggaagtgatgactgctttgcaaacaatacggtggtaaagatga |
29528950 |
T |
|
| Q |
365 |
ccaaggagaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaagggctctgaggataacacaataggccaaatac |
464 |
Q |
| |
|
| || || |||| |||| ||| ||| |||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| || ||||||| ||| |
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| T |
29528951 |
ctaaagatgacactccatagagaaagaacttgaaaggtttccaccttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactac |
29529050 |
T |
|
| Q |
465 |
acttgacacaaggccaactagtctcca |
491 |
Q |
| |
|
|||||||| ||| ||||||| |||||| |
|
|
| T |
29529051 |
acttgacataagcccaactactctcca |
29529077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 184 - 437
Target Start/End: Complemental strand, 28183848 - 28183592
Alignment:
| Q |
184 |
aaagcaaatgcagcattcgaaactatactcaatatttcaggtttcccattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactg |
283 |
Q |
| |
|
||||||||||||||||| |||| || ||||| ||| | |||||| ||||||| |||| ||| || ||||||||||||||||||| |||| |||||| |
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|
| T |
28183848 |
aaagcaaatgcagcatttgaaattacactcagtatgttaggttttccattcacagcttcgtcatagaagaatgagtacactgagataatcatcaaaacca |
28183749 |
T |
|
| Q |
284 |
caaagcttatgtaag---tttttagttgagcatattttgtggagggtgagagctgctttacatacaatatggtgctaaggatagccaaggagaacaccac |
380 |
Q |
| |
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||||| ||||| ||| ||||||||||| ||| ||||| ||||| |||||||||| ||||||||| | | ||| || ||||| ||| | || |
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| T |
28183748 |
caaaggttatgcaagtgttttttagttgaacatggcgcgtggaaggtgatgcctgctttacaactaatatggtggttaagatggctaaggacaacgctac |
28183649 |
T |
|
| Q |
381 |
atacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaagggct |
437 |
Q |
| |
|
||| ||| ||| |||||| ||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
28183648 |
atagagaaagaccttgaaaggattccaccttccaaataatcgattgaaagaagggct |
28183592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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