View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18579_low_7 (Length: 438)
Name: NF18579_low_7
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 28497621 - 28497209
Alignment:
| Q |
11 |
caaaggcacaaacacaagacacactattccacaacattgtgcgtgtgacttgtgtctgattttgtatgtcgtgtatgactatgaaagagagagaatatca |
110 |
Q |
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| T |
28497621 |
caaaggcacaaacacaagacacactattccacaacattgtgcgtgtgacttgtgtctgattttgtatgtcgtgtatgactatgaaagagagagaatatca |
28497522 |
T |
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| Q |
111 |
atgtatgtgcgtgtgtgaaatgtgaaatgtgcttatggtgggtccatttaaatattatatggctcaccttctttgaagatacaagcaaaataataagatt |
210 |
Q |
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| T |
28497521 |
atgtatgtgcgtgtgtgaaatgtgaaatgtgcttatggtgggtccatttaaatattatatggctcaccttctttgaagatacaagcaaaataataagatt |
28497422 |
T |
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| Q |
211 |
agaaaatgactactccaaagaccaaaacagcaagagagagccaagacagag-nnnnnnngagaatagtaataatgttatagtatatggttatagttatat |
309 |
Q |
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| T |
28497421 |
agaaaatgactactccaaagaccaaaacagcaagagagagccaagacagagaaaaaaaagagaatagtaataatgttatagtatatggttatagttatat |
28497322 |
T |
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| Q |
310 |
agctatctatgcttttggttttatctatcttcgcagaaaatgaaaatcaaacaaacaagaaagcatacatcacaagtttgaacctcttgcattagtttat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28497321 |
agctatctatgcttttggttttatctatcttcgcagaaaatgaaaatcaaacaaacaagaaagcatacatcacaagtttgaacctcttgcattagtttat |
28497222 |
T |
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| Q |
410 |
atagttttctttt |
422 |
Q |
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| T |
28497221 |
atagttttctttt |
28497209 |
T |
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