View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18579_low_8 (Length: 402)
Name: NF18579_low_8
Description: NF18579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18579_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 1310634 - 1310768
Alignment:
| Q |
251 |
gtaggccttcgtattcctgatgctgattctgcttcaccacaaaccattgatcttgttctccttactaaacggtattatttgtatctctttatgtttccga |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1310634 |
gtaggccttcgtattcctgatgctgattctgcttcaccacaaaccattgatcttgttctccttactaaacggtattatttgtatctctttatgtttccga |
1310733 |
T |
|
| Q |
351 |
cacttctgatacaaggtgtgtctgtgtccaaacac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1310734 |
cacttctgatacaaggtgtgtctgtgtccaaacac |
1310768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 1310388 - 1310495
Alignment:
| Q |
16 |
tgtggtttgattatttacaaactcttcaaatgcttcttttatgacgacgacgttttggacattgaagcttctgattccactgttctcttctccgtatcta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1310388 |
tgtggtttgattatttacaaactcttcaaatgcttcttttatgacgacgacgttttggatattgaagcttctgattccactgttctcttctccgtagcta |
1310487 |
T |
|
| Q |
116 |
ataggttc |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
1310488 |
ataggttc |
1310495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 41728303 - 41728384
Alignment:
| Q |
40 |
ttcaaatgcttcttttatgacgacgacgttttggacattgaagcttctgattccactgttctcttctccgtatctaataggt |
121 |
Q |
| |
|
|||||||||||| || ||||||||| |||||| ||||| ||||||||| |||||||| ||||||||||| | ||||||||| |
|
|
| T |
41728303 |
ttcaaatgcttccttaatgacgacggcgttttagacatcgaagcttctcattccactcttctcttctcccttgctaataggt |
41728384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 41728546 - 41728590
Alignment:
| Q |
282 |
cttcaccacaaaccattgatcttgttctccttactaaacggtatt |
326 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |||||| |
|
|
| T |
41728546 |
cttcaccacaaaccattgatcttcttctcctcactaaaaggtatt |
41728590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University