View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857R-Insertion-1 (Length: 1030)
Name: NF1857R-Insertion-1
Description: NF1857R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857R-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 574; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 15 - 639
Target Start/End: Original strand, 34933612 - 34934234
Alignment:
| Q |
15 |
cctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctggagatctt |
114 |
Q |
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||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34933612 |
cctttgagaaccgggttttggattttgatttgtttgaggtaaaactcaacaagttgtcttgatgttaactgctttctttggaaggcaagctggagatctt |
34933711 |
T |
|
| Q |
115 |
gcacagttgcttccttgattgagaatccactagccaaggttattgttgatagcatagaagggagtgtaactagaagaaggatcatagagaggaattgaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34933712 |
gcacagttgcttccttgattgagaatccactagccaaggttgttgttgatagcatagaagggagtgtaactagaagaacgatcatagagaggaattgaaa |
34933811 |
T |
|
| Q |
215 |
gaaagagctagcacatgctgagtccatgagtcttcaaagttgaaagttgaaactaagcatctataatgcagtattctaatctatatatactagtggatat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34933812 |
gaaagagctagcacatgctgagtccatgagtcttcaaagttgaaagttgaaactaagcatctataatgcagtattctaatctata--tactagtggatat |
34933909 |
T |
|
| Q |
315 |
atttttgaattgaagtggacgatgcccatggttctaacttctacgcagtttgcccaatagatagcaactttgtattggtaaaactaatttatttgcttga |
414 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34933910 |
atttttgaattgaagtggacgatgctcatggttctaacttctacgcagtttgcccaatagatagcaactttgtattggtcaaactaatttatttgcttga |
34934009 |
T |
|
| Q |
415 |
aaggacatgtgagttttttactttacacagaccatttcaatggtaatatgtgttgaatgttctctaattattatgaaaatgactcatgataacacaacag |
514 |
Q |
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| T |
34934010 |
aaggacatgtgagttttttactttacacagaccatttcaatggtaatatgtgttgaatgttctctaattattatgaaaatgactcatgataacacaacag |
34934109 |
T |
|
| Q |
515 |
tatacaaaagaatatctccctttttctttaccaaatgtatctttcaatggagccaattcatagagcatcaaaatgtaggtatatatttcttataacaacg |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34934110 |
tatacaaaagaatatctccctttttctttaccaaatgtatctttcaatggagccaattcatagagcatcaaaatgtaggtatatatttcttataacaacg |
34934209 |
T |
|
| Q |
615 |
acaatttaaatagtagttagtcatg |
639 |
Q |
| |
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||||||||||||||| ||||||||| |
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| T |
34934210 |
acaatttaaatagtaattagtcatg |
34934234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 34929515 - 34929746
Alignment:
| Q |
9 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
34929515 |
aagacacctttgagaactgggttttggatattgatttgtttgaggtaaaactcaacaagttgtcttgatgttaactgctttctttggaaagcaagttgga |
34929614 |
T |
|
| Q |
109 |
gatcttgcacagttgcttccttgattgagaatccactagccaaggttattgttgatagcatagaagggagtgtaactagaagaaggatcatagagaggaa |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||| |||||| | ||||| ||||| |
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| T |
34929615 |
gatcttgcacagttgcttccttgattgagattccacttgccaagg---ttgttgatagcatagaagagagtgtaactagtagaagggttatagaaaggaa |
34929711 |
T |
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| Q |
209 |
ttgaaagaaagagctagcacatgctgagtccatga |
243 |
Q |
| |
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| T |
34929712 |
ttgaaagaaagagctagcacatgctgaggccatga |
34929746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 710 - 997
Target Start/End: Original strand, 34934470 - 34934755
Alignment:
| Q |
710 |
ggcacacgagaaaggacttttaagtttcaacaacttaatgccctattttggtcacaagcttctatttaccaattcggaatgtaaattttattttattcca |
809 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||| |
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| T |
34934470 |
ggcacacgagaaaggacttttaagtttcaacaacttaatgccctattttggtcacaagcttctgttaccaaattcggaatgtaa-----attttattcca |
34934564 |
T |
|
| Q |
810 |
cctcatctaatttcgatagatattatataaaaaagattaaccaactctc--aaattttaacggttgtttcaattttattggattacactttttcggtttc |
907 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34934565 |
cctgatctaatttcgatagatattatataaaaaagattaaccaactctcaaaaattttaacggttgtttcaattttattggattacactttttccgtttc |
34934664 |
T |
|
| Q |
908 |
catccga---atttcttcaagccctttaagcctccgcacattcaacctttcaattatgagacacgacccaaagaaattcaattatcgtttaca |
997 |
Q |
| |
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| T |
34934665 |
catccgatttatatctcaaagccctttaagcct-cgcacattcaacc-ttcaataagaagacacagaccaaagaaattccattctcgtttaca |
34934755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 34913191 - 34913337
Alignment:
| Q |
9 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
108 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||| || || || | |
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| T |
34913191 |
aagactccttttagaactgggttttgtattttgatttggttgaggtaaaactcaacaagttgtcttgatgttaattggtttctttggaaagctagttgaa |
34913290 |
T |
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| Q |
109 |
gatcttgcacagttgcttccttgattgagaatccactagccaaggtt |
155 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
34913291 |
gatcttgcacagttgcttccttgattgagaattcactggccaaggtt |
34913337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 34899352 - 34899483
Alignment:
| Q |
9 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||| ||||||| || || |||| |
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| T |
34899352 |
aagacacctttgagaactgggttttggatattgatttggttgagatagaactcaacaagctgtcttgatgttaactgttttgtttggaaagctagttgga |
34899451 |
T |
|
| Q |
109 |
gatcttgcacagttgcttccttgattgagaat |
140 |
Q |
| |
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|||||||||| ||||||||||||| ||||||| |
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| T |
34899452 |
gatcttgcacggttgcttccttgactgagaat |
34899483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 34922777 - 34922908
Alignment:
| Q |
9 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| || ||| |||| || || || || | |
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| T |
34922777 |
aagactcctttgagaactgggttttggatattgatttgattgagatagaactcaacaagctgtcttgatgttaattggtttgtttgaaaagctagttgaa |
34922876 |
T |
|
| Q |
109 |
gatcttgcacagttgcttccttgattgagaat |
140 |
Q |
| |
|
||||||| || |||||||||| ||||||||| |
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|
| T |
34922877 |
gatcttgtactgttgcttcctcaattgagaat |
34922908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 513 - 596
Target Start/End: Original strand, 34930326 - 34930409
Alignment:
| Q |
513 |
agtatacaaaagaatatctccctttttc-tttaccaaatgtatctttcaatggagccaattcatagagcatcaaaatgtaggtat |
596 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||| || |||||||||| | ||||||||| ||||||||| |||||||||||| |
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| T |
34930326 |
agtatacaaaagaatatctcacttttttatttaccacatatatctttcaacg-agccaattcttagagcatctaaatgtaggtat |
34930409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 687
Target Start/End: Original strand, 34934414 - 34934445
Alignment:
| Q |
656 |
tggtagttagtcatgttgtgtgtaactatctc |
687 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
34934414 |
tggtagttagtcatgttgtgtgtaactatctc |
34934445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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