View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1857R-Insertion-2 (Length: 1002)
Name: NF1857R-Insertion-2
Description: NF1857R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857R-Insertion-2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 672
Target Start/End: Complemental strand, 32627065 - 32626398
Alignment:
| Q |
9 |
aagtgaaattggaagttattactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtgatgattttgaatctgaatc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627065 |
aagtgaaattggaagttattactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtgatgattttgaatctgaatc |
32626966 |
T |
|
| Q |
109 |
attcggagatgatggatactatgtggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggtgttgttaaagagattttt |
208 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32626965 |
attcggagatgatggatacaatgtggcacaatgcatgagagctttggctgaacctttgctagtcagtcattttggtgaaggtgttgttaaagagattttt |
32626866 |
T |
|
| Q |
209 |
aaccgctataaaaaatatttaaccgatcgaaactctaaagagagaactaggttcatcaatatcaccatattattgactaaaagatcatgagcaagaacat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32626865 |
aaccgctataaaaaatatttaaccgatcgaaactctaaagggagaactaagttcatcaatatcaccatattattggctaaaagatcatgagcaagaacat |
32626766 |
T |
|
| Q |
309 |
ttttggttaaggtttatattttggttcaaaatattcaaagttataaggct----------------------agtatttagttagaaaatgttatgatgg |
386 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
32626765 |
ttttggtt------------------caaaatattcaaagttataaggctagttagcattatcttcctagctagtatttagttagaaaatgttatgatga |
32626684 |
T |
|
| Q |
387 |
nnnnnnntataggaataaaaacttagatgtcactactcactagttgtgatatatgctcttgattgtaagataaaattatgtatccctagtgcagaaattg |
486 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32626683 |
aaaaaaatataggaataaaaacgtagatgtcactactcactagttgtgatatatgctcttgattgtaagataaaattatgtatccctagtgtagaaattg |
32626584 |
T |
|
| Q |
487 |
aattttaagctagtttttaaatccctattaagccgattttgaactaacttaaagacattttgtcttagtatacaatttatgacaatttgaaaatcgtctt |
586 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||| |
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|
| T |
32626583 |
aattttaagttagtttttaaatcccttttaagtcggttttgaactaacttaaagacgttttgtcttagtatacggtttatgacaatttaaaaatcatctt |
32626484 |
T |
|
| Q |
587 |
cagattaaatgtttgaatccagttgaaattaaatattcattttaaacatatcattttgtgtctcatggatacacacggatttttgt |
672 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32626483 |
cagattaaatgtttgaatccagttgagattaaatattcattttaaacatatcattttgtgtcacatggatacacacggatttttgt |
32626398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 784 - 995
Target Start/End: Complemental strand, 32626325 - 32626116
Alignment:
| Q |
784 |
cttttactcatcaacatcaatcaccttatcttgttgtgattcaaagataaagttcacgactaagaaaaagatctacattattataataaatatgaaacaa |
883 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32626325 |
cttttattcatcaacatcaatcaccttatcttgttgtgattcaaagataaagttcacgcctaagaaaaagatctacatta-tataataaatatgaaacaa |
32626227 |
T |
|
| Q |
884 |
agtaaaacatatttatatgatacctttctgctttgggcaatccatccaaaagggtttacattgctctaatagcttcatttctgcgatgattt-caacaca |
982 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||| ||||||| |
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| T |
32626226 |
agtaaaacatatttatatgatacttttctgcttt-ggcaatccatccaagagggtttacatagctct-atagtttcatttctgcgatgatttccaacaca |
32626129 |
T |
|
| Q |
983 |
aaatttctctaag |
995 |
Q |
| |
|
||||||||||||| |
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|
| T |
32626128 |
aaatttctctaag |
32626116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 32702737 - 32702662
Alignment:
| Q |
120 |
atggatactatgtggcacaatgcatgagagctttggctgaacctttgcta---gttagtcattttggtgaaggtgt |
192 |
Q |
| |
|
|||||||| |||||||||||||||| || ||| |||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
32702737 |
atggatacgatgtggcacaatgcataagggctgtggctgaacctttgttgttggttagtcattttggtgaaggtgt |
32702662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 7292180 - 7292132
Alignment:
| Q |
140 |
tgcatgagagctttggctgaacctttgctagttagtcattttggtgaag |
188 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||| |||||||||| |
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|
| T |
7292180 |
tgcattagagctgtggttgaacctttgctagttagtcactttggtgaag |
7292132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 104 - 316
Target Start/End: Complemental strand, 27735975 - 27735763
Alignment:
| Q |
104 |
gaatcattcggagatgatggatactatgtggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggtgttgttaaagaga |
203 |
Q |
| |
|
|||||| || |||||||||||||| || ||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||| ||| ||||| |
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|
| T |
27735975 |
gaatcactcagagatgatggatacaatatggcacaatgcattagggctgtggctgaacctttgctagttagtcactttggtgaaggtgtcattacagaga |
27735876 |
T |
|
| Q |
204 |
tttttaaccgctataaaaaatatttaaccgatcgaaactctaaagagagaactaggttcatcaatatcaccatattattgactaaaagatcatgagcaag |
303 |
Q |
| |
|
||||| ||||||||| |||| |||||| ||||| | || ||||||| ||||| ||||| |||| | | |||||| ||||| | || | | ||||||| |
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|
| T |
27735875 |
tttttgaccgctatagaaaaattttaactgatcggatgtccaaagagaaaactaagttcaccaatcttagcatattgttgacaagaaaaccttgagcaaa |
27735776 |
T |
|
| Q |
304 |
aacatttttggtt |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27735775 |
aacatttttggtt |
27735763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 27736094 - 27736008
Alignment:
| Q |
9 |
aagtgaaattggaagttattactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtgatgatt |
95 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||||||||| ||| || | ||| | |||||||| ||||||||||||| |||||||| |
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|
| T |
27736094 |
aagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctgaagttaattggaatgctcttgatgatt |
27736008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 5810662 - 5810560
Alignment:
| Q |
117 |
atgatggatactatgtggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgcta |
216 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||| |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| ||||| |
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|
| T |
5810662 |
atgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgctagctagtcactttggtgaaggtgtcattaaagagatttttaatcgcta |
5810563 |
T |
|
| Q |
217 |
taa |
219 |
Q |
| |
|
||| |
|
|
| T |
5810562 |
taa |
5810560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 21941752 - 21941687
Alignment:
| Q |
157 |
tgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgctataaaaa |
222 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | ||||| | ||||||||||||||||| |
|
|
| T |
21941752 |
tgaacctttgcttattagtcattttggtgaaggtgtgactgaagaggtatttaaccgctataaaaa |
21941687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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