View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1857R-Insertion-6 (Length: 921)

Name: NF1857R-Insertion-6
Description: NF1857R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1857R-Insertion-6
NF1857R-Insertion-6
[»] chr7 (19 HSPs)
chr7 (132-499)||(29859435-29859821)
chr7 (586-796)||(29859818-29860026)
chr7 (16-113)||(29859079-29859176)
chr7 (113-338)||(29874477-29874710)
chr7 (18-113)||(29874140-29874235)
chr7 (37-110)||(29899023-29899096)
chr7 (35-110)||(29431343-29431418)
chr7 (39-110)||(29454448-29454519)
chr7 (414-476)||(29874805-29874867)
chr7 (265-308)||(29881382-29881425)
chr7 (60-110)||(29106486-29106536)
chr7 (45-113)||(29476673-29476741)
chr7 (148-188)||(29899371-29899411)
chr7 (137-181)||(29922033-29922077)
chr7 (795-845)||(2478411-2478462)
chr7 (796-845)||(12089820-12089870)
chr7 (439-500)||(29881566-29881628)
chr7 (796-845)||(31879349-31879399)
chr7 (439-476)||(6864590-6864627)
[»] chr1 (12 HSPs)
chr1 (42-110)||(17561097-17561166)
chr1 (38-97)||(4366850-4366909)
chr1 (113-188)||(17560806-17560877)
chr1 (46-110)||(39379412-39379476)
chr1 (138-188)||(21855416-21855466)
chr1 (259-311)||(17560671-17560723)
chr1 (797-846)||(25242562-25242612)
chr1 (796-845)||(40999465-40999515)
chr1 (143-188)||(4570919-4570964)
chr1 (797-845)||(11738160-11738209)
chr1 (797-845)||(13217410-13217459)
chr1 (797-845)||(16832145-16832194)
[»] chr4 (11 HSPs)
chr4 (432-476)||(1686002-1686046)
chr4 (271-338)||(3557858-3557925)
chr4 (797-845)||(20949498-20949546)
chr4 (797-845)||(30217749-30217797)
chr4 (797-845)||(46691400-46691448)
chr4 (796-845)||(21668265-21668315)
chr4 (796-845)||(21677029-21677079)
chr4 (436-504)||(3560664-3560733)
chr4 (797-845)||(35416058-35416107)
chr4 (797-845)||(40994909-40994958)
chr4 (439-515)||(53775100-53775177)
[»] scaffold0014 (1 HSPs)
scaffold0014 (796-845)||(75666-75716)
[»] chr5 (3 HSPs)
chr5 (138-188)||(24330932-24330982)
chr5 (796-845)||(42801056-42801106)
chr5 (797-845)||(6270641-6270690)
[»] chr2 (8 HSPs)
chr2 (796-845)||(24662488-24662538)
chr2 (795-845)||(42700334-42700385)
chr2 (797-846)||(13229704-13229754)
chr2 (796-845)||(23924393-23924443)
chr2 (797-846)||(27258134-27258184)
chr2 (797-846)||(36556924-36556974)
chr2 (797-845)||(31759029-31759078)
chr2 (797-845)||(43992263-43992312)
[»] chr6 (2 HSPs)
chr6 (797-845)||(21595890-21595939)
chr6 (797-846)||(6778305-6778355)
[»] chr3 (5 HSPs)
chr3 (432-476)||(3626034-3626078)
chr3 (797-846)||(2357909-2357959)
chr3 (793-846)||(27104772-27104826)
chr3 (796-845)||(36468797-36468847)
chr3 (797-845)||(20962620-20962669)
[»] scaffold0649 (1 HSPs)
scaffold0649 (141-188)||(5428-5475)
[»] chr8 (1 HSPs)
chr8 (797-845)||(13848689-13848738)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 132 - 499
Target Start/End: Original strand, 29859435 - 29859821
Alignment:
Q  132 tattgttacaaggaaattgattttgttatatgggagatgaagaaatttggagttgaa------------ccatttcttaaagttagttatcacaatcttc 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||            |||||||||||| ||||||||||||||||||    
T  29859435 tattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttc 29859534  T
Q  220 aagttaattacgactatagtgatggttccataaaatatcattttaaattggtgccattgtttctttctgaggatggggatacattgatattgtgtagcag 319  Q
    ||||||||||| |||||||||||| |  |||||||||||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||| |||    
T  29859535 aagttaattacaactatagtgatgatcgcataaaatatcattttaaattggtgccgatgtttctttatgaggatgcggatacattgatattgtgtaacag 29859634  T
Q  320 tcaagaaagggaagcaat----tataattggagaaataatcgagcagggcgtacaagagctaccgta---tatggatcaattacagatgatagagttagt 412  Q
    ||||||||||||||||||    |||||||||||||||||||| | || ||| ||| |||||||| ||   ||||||||| |||||||||||| || ||||    
T  29859635 tcaagaaagggaagcaattatctataattggagaaataatcgtgtagagcgaacaggagctaccatatattatggatcatttacagatgatatagctagt 29859734  T
Q  413 ggtatatcttggaaaatgaccaagggttatgttgaaagcttagtttcgatttgttgaaagtaagaccccttccatgatttacttgtt 499  Q
     ||||||||||||  ||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29859735 tgtatatcttggagcatggccaagggttgtgttgaaagcttagtttcgatttgttgaaagtaagatcccttccatgatttacttgtt 29859821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 586 - 796
Target Start/End: Original strand, 29859818 - 29860026
Alignment:
Q  586 tgttgattaaactaaatgattatttgaactctgttatctttgtatatttgaagtatatagaaatgcttttacaaattaatatatgttggaaattgttctt 685  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  29859818 tgttgattaaaataaatgattatttgaactcttttatctatgtatatttgaagtata--gaaatgcttttacaaattaatatatgttggaaattgttctt 29859915  T
Q  686 ggtctgattttatttacatcatttcaagtaaatttatgctgatattatttgaagcattgactgacatgtttctgctagcgcatgtttcacttgcctttat 785  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  29859916 ggtctgattttatttacgtcatttcaagtaaatttatgctgatattatttgaagcattgaccgacatgtttctgctagcacatgtttcacttgcctttat 29860015  T
Q  786 gtggtatgtgt 796  Q
    |||||||||||    
T  29860016 gtggtatgtgt 29860026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 29859079 - 29859176
Alignment:
Q  16 cacgttacaaacgacgtgcactgagaagcaatgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcctatt 113  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29859079 cacgttacaatcaacgtgaactgagaagcaatgtgagaattctaagtttgggtgataacgtttggagagatattgaaagtttcccggttgatcctatt 29859176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 113 - 338
Target Start/End: Original strand, 29874477 - 29874710
Alignment:
Q  113 tgtctttgtttttcttatatattgttacaaggaaattgattttgttatatgggagatgaagaaatttggagttgaa------------ccatttcttaaa 200  Q
    ||||||||||||||||||    ||||||||||||| ||||||  |||||||| | |||||||||||||| ||||||            ||||| ||||||    
T  29874477 tgtctttgtttttcttat----tgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaa 29874572  T
Q  201 gttagttatcacaatcttcaagttaattacgactatagtgatggttccataaaatatcattttaaattggtgccattgtttctttctgaggatggggata 300  Q
     |||||||||| ||||||||| || |||| |||||||||  || || ||| || ||||||||||| |||    | |||||||||||||||||||| ||||    
T  29874573 attagttatcaaaatcttcaaattgattatgactatagttttgatttcatgaagtatcattttaacttgcaatccttgtttctttctgaggatggtgata 29874672  T
Q  301 cattgatattgtgtagcagtcaagaaagggaagcaatt 338  Q
    || ||||||||  |||||||||||||| ||||| ||||    
T  29874673 cactgatattggatagcagtcaagaaatggaagtaatt 29874710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 29874140 - 29874235
Alignment:
Q  18 cgttacaaacgacgtgcactgagaagcaatgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcctatt 113  Q
    |||||||| ||||||| |||||||||||||| |||||||||| |||| ||  | |||| ||||||| |||||||||||||||| ||||||||||||    
T  29874140 cgttacaatcgacgtgaactgagaagcaatgcgagaattctaggttttggcaataacgattggagacatattgaaagtttccctgttgatcctatt 29874235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 29899023 - 29899096
Alignment:
Q  37 tgagaagcaatgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcct 110  Q
    ||||||||||||||| |||||| ||||| ||||| || |||||||||||||||||||||||||| |||| ||||    
T  29899023 tgagaagcaatgtgaaaattctcagttttggtgataatgtttggagagatattgaaagtttcccagttgttcct 29899096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 29431418 - 29431343
Alignment:
Q  35 actgagaagcaatgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcct 110  Q
    ||||||||||||||| | |||| |||||||| |||| || |||||||||||||||||||||||||| |||| ||||    
T  29431418 actgagaagcaatgtcaaaattttaagtttgagtgataatgtttggagagatattgaaagtttccctgttgttcct 29431343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 29454519 - 29454448
Alignment:
Q  39 agaagcaatgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcct 110  Q
    ||||||||||| | |||||||||||||  ||| || |||||||||||||||||||||||||| |||| ||||    
T  29454519 agaagcaatgtcaaaattctaagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcct 29454448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 476
Target Start/End: Original strand, 29874805 - 29874867
Alignment:
Q  414 gtatatcttggaaaatgaccaagggttatgttgaaagcttagtttcgatttgttgaaagtaag 476  Q
    ||||||||||| | ||| ||| || |||||||||||||||||||| |||||||||||||||||    
T  29874805 gtatatcttggtacatggccatggattatgttgaaagcttagttttgatttgttgaaagtaag 29874867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 29881382 - 29881425
Alignment:
Q  265 aattggtgccattgtttctttctgaggatggggatacattgata 308  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  29881382 aattggtgccattgcttctttctgaggatggcgatacattgata 29881425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 29106486 - 29106536
Alignment:
Q  60 agtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcct 110  Q
    ||||| ||||| || |||||||||||| |||||||||||||||||||||||    
T  29106486 agttttggtgataatgtttggagagatgttgaaagtttcccggttgatcct 29106536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 29476741 - 29476673
Alignment:
Q  45 aatgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcctatt 113  Q
    |||||||||||||| ||||| || || || ||||||||||| ||| |||||||||| |||| |||||||    
T  29476741 aatgtgagaattctcagttttggagataatgtttggagagagattcaaagtttccccgttgttcctatt 29476673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 29899371 - 29899411
Alignment:
Q  148 ttgattttgttatatgggagatgaagaaatttggagttgaa 188  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  29899371 ttgattttgttatatggcagatgaagaaatttggggttgaa 29899411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 29922077 - 29922033
Alignment:
Q  137 ttacaaggaaattgattttgttatatgggagatgaagaaatttgg 181  Q
    |||||| |||| |||||||||||||||| ||||||||||||||||    
T  29922077 ttacaaagaaactgattttgttatatggcagatgaagaaatttgg 29922033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 795 - 845
Target Start/End: Complemental strand, 2478462 - 2478411
Alignment:
Q  795 gttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  2478462 gttgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 2478411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 12089820 - 12089870
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  12089820 ttgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 12089870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 29881566 - 29881628
Alignment:
Q  439 ttatgttgaaagcttagtttcgatttgttgaaagtaag-accccttccatgatttacttgttt 500  Q
    ||||||||||||||||||||| |||| |||||||||||  || || ||||||||||| |||||    
T  29881566 ttatgttgaaagcttagtttcaattttttgaaagtaagttcctctcccatgatttacatgttt 29881628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 845
Target Start/End: Complemental strand, 31879399 - 31879349
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  31879399 ttgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 31879349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 6864627 - 6864590
Alignment:
Q  439 ttatgttgaaagcttagtttcgatttgttgaaagtaag 476  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  6864627 ttatgttgaaagcttggtttcgttttgttgaaagtaag 6864590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 17561166 - 17561097
Alignment:
Q  42 agcaatgtgagaattct-aagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcct 110  Q
    ||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||||| ||||    
T  17561166 agcaatgtgagaatttttaagtttgggtgataacgtttggagagatattcaaagtttcccggttgttcct 17561097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 4366909 - 4366850
Alignment:
Q  38 gagaagcaatgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagttt 97  Q
    |||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  4366909 gagaagcattgtgaggattctaagtgtgggtgataacgtttggagagatattgaaagttt 4366850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 17560877 - 17560806
Alignment:
Q  113 tgtctttgtttttcttatatattgttacaaggaaattgattttgttatatgggagatgaagaaatttggagttgaa 188  Q
    ||||||||||||||||||    |||||||||||||| ||||| ||||||||| | |||||||||||||| ||||||    
T  17560877 tgtctttgtttttcttat----tgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaa 17560806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 39379476 - 39379412
Alignment:
Q  46 atgtgagaattctaagtttgggtgacaacgtttggagagatattgaaagtttcccggttgatcct 110  Q
    |||||||| || | ||||||||||| || ||||||||| ||||||||||||||||||||| ||||    
T  39379476 atgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagtttcccggttgttcct 39379412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 21855466 - 21855416
Alignment:
Q  138 tacaaggaaattgattttgttatatgggagatgaagaaatttggagttgaa 188  Q
    ||||||||||  |||||||||||||||||||||||| ||||||| ||||||    
T  21855466 tacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaa 21855416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 17560723 - 17560671
Alignment:
Q  259 attttaaattggtgccattgtttctttctgaggatggggatacattgatattg 311  Q
    ||||||| |||||||| ||||||||||||||||||||  ||||| ||||||||    
T  17560723 attttaacttggtgccgttgtttctttctgaggatggtaatacactgatattg 17560671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 846
Target Start/End: Complemental strand, 25242612 - 25242562
Alignment:
Q  797 tgatgtaggatttttatatgtcata-aactatttacacgtgagtataatat 846  Q
    ||||||| |||||||| |||| ||| |||||||||||||||||||||||||    
T  25242612 tgatgtaagatttttacatgttatataactatttacacgtgagtataatat 25242562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 40999465 - 40999515
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  40999465 ttgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 40999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 4570919 - 4570964
Alignment:
Q  143 ggaaattgattttgttatatgggagatgaagaaatttggagttgaa 188  Q
    ||||| |||||||||||||||| | |||||||||||||| ||||||    
T  4570919 ggaaactgattttgttatatggcaaatgaagaaatttggggttgaa 4570964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 11738160 - 11738209
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  11738160 tgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 11738209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 13217410 - 13217459
Alignment:
Q  797 tgatgtaggatttttatatgtcataaact-atttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| | ||||||||||||||||||||    
T  13217410 tgatgtaagatttttacatgtcataaaattatttacacgtgagtataata 13217459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 16832145 - 16832194
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||||| |||||| || ||||||| ||||||||||||||||||||||    
T  16832145 tgatgtaggttttttacatctcataaaactatttacacgtgagtataata 16832194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 1686046 - 1686002
Alignment:
Q  432 ccaagggttatgttgaaagcttagtttcgatttgttgaaagtaag 476  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  1686046 ccaagggttatgttgaaagcttaatttcgatttgttgaaagtaag 1686002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 3557858 - 3557925
Alignment:
Q  271 tgccattgtttctttctgaggatggggatacattgatattgtgtagcagtcaagaaagggaagcaatt 338  Q
    ||||| ||||||||||| ||||||| |||||| || |||||| ||| |||||||||||||||||||||    
T  3557858 tgccagtgtttctttctaaggatggtgatacactggtattgtctagtagtcaagaaagggaagcaatt 3557925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 797 - 845
Target Start/End: Complemental strand, 20949546 - 20949498
Alignment:
Q  797 tgatgtaggatttttatatgtcataaactatttacacgtgagtataata 845  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  20949546 tgatgtaagatttttacatgtcataaactatttacatgtgagtataata 20949498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 30217749 - 30217797
Alignment:
Q  797 tgatgtaggatttttatatgtcataaactatttacacgtgagtataata 845  Q
    ||||||| |||||||| ||||||||||| |||||||||| |||||||||    
T  30217749 tgatgtaagatttttacatgtcataaaccatttacacgtaagtataata 30217797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 46691400 - 46691448
Alignment:
Q  797 tgatgtaggatttttatatgtcataaactatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||| |||||||||||||| ||||||||||||    
T  46691400 tgatgtaagatttttacatgtgataaactatttacatgtgagtataata 46691448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 21668265 - 21668315
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  21668265 ttgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 21668315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 21677029 - 21677079
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  21677029 ttgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 21677079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 504
Target Start/End: Complemental strand, 3560733 - 3560664
Alignment:
Q  436 gggttatgttgaaagcttagtttcgatttgttgaaagtaag-accccttccatgatttacttgtttgaat 504  Q
    ||||||||||||||||||| |||| || |||||||||||||  || ||||  || |||||||||||||||    
T  3560733 gggttatgttgaaagcttaatttcaatctgttgaaagtaagttcctcttcgttggtttacttgtttgaat 3560664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 35416058 - 35416107
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  35416058 tgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 35416107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 40994909 - 40994958
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| ||||||| |||||||||| |||||||||||| |||||||||    
T  40994909 tgatgtagtatttttacatgtcataaaactatttacacgtaagtataata 40994958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 515
Target Start/End: Original strand, 53775100 - 53775177
Alignment:
Q  439 ttatgttgaaagcttagtttcgatttgttgaaagtaagaccc-cttccatgatttacttgtttgaatatttgttaatt 515  Q
    ||||||||||||||| || || |  |||||||||||||  || |||||| ||||||||||||||||| | ||||||||    
T  53775100 ttatgttgaaagcttggtatcaacgtgttgaaagtaagttcctcttccaagatttacttgtttgaatttgtgttaatt 53775177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 75666 - 75716
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  75666 ttgatgtaagatttttacatgtcataaaactatttacacgtgagtataata 75716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 24330982 - 24330932
Alignment:
Q  138 tacaaggaaattgattttgttatatgggagatgaagaaatttggagttgaa 188  Q
    ||||||||||  |||||||||||||||||||||||| ||||||| ||||||    
T  24330982 tacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaa 24330932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 796 - 845
Target Start/End: Complemental strand, 42801106 - 42801056
Alignment:
Q  796 ttgatgtaggatttttatatgtcat-aaactatttacacgtgagtataata 845  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  42801106 ttgatgtaggatttttacatgtcataaaactatttacacgtgactataata 42801056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 845
Target Start/End: Complemental strand, 6270690 - 6270641
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  6270690 tgatgtaagatttttacatgtcataaaactatttacacgtgagtataata 6270641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 24662488 - 24662538
Alignment:
Q  796 ttgatgtaggatttttatatgtcata-aactatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  24662488 ttgatgtaagatttttacatgtcatataactatttacacgtgagtataata 24662538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 795 - 845
Target Start/End: Original strand, 42700334 - 42700385
Alignment:
Q  795 gttgatgtaggatttttatatgtcat-aaactatttacacgtgagtataata 845  Q
    |||||||||||||||||| || |||| ||||||||||||||| |||||||||    
T  42700334 gttgatgtaggatttttacatctcataaaactatttacacgtaagtataata 42700385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 846
Target Start/End: Original strand, 13229704 - 13229754
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataatat 846  Q
    ||||||| |||||||| |||||||||| |||||||||||| ||||||||||    
T  13229704 tgatgtaagatttttacatgtcataaaactatttacacgtaagtataatat 13229754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 23924393 - 23924443
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| ||||| || |||||||||| ||||||||||||||||||||||    
T  23924393 ttgatgtaagatttgtacatgtcataaaactatttacacgtgagtataata 23924443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 846
Target Start/End: Complemental strand, 27258184 - 27258134
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataatat 846  Q
    ||||||| |||||||| |||||||||| |||||||||||| ||||||||||    
T  27258184 tgatgtaagatttttacatgtcataaaactatttacacgtaagtataatat 27258134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 846
Target Start/End: Original strand, 36556924 - 36556974
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataatat 846  Q
    ||||||| |||||||| |||||||||| |||||||||||| ||||||||||    
T  36556924 tgatgtaagatttttacatgtcataaaactatttacacgtaagtataatat 36556974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Complemental strand, 31759078 - 31759029
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  31759078 tgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 31759029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Complemental strand, 43992312 - 43992263
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  43992312 tgatgtatgatttttacatgtcataaaactatttacacgtaagtataata 43992263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 21595890 - 21595939
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  21595890 tgatgtaagatttttacatgtcataaaactatttacacgtgagtataata 21595939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 846
Target Start/End: Complemental strand, 6778355 - 6778305
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataatat 846  Q
    ||||||| |||||||| |||||||||| ||||||||| |||||||||||||    
T  6778355 tgatgtaagatttttacatgtcataaaactatttacatgtgagtataatat 6778305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 3626034 - 3626078
Alignment:
Q  432 ccaagggttatgttgaaagcttagtttcgatttgttgaaagtaag 476  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||    
T  3626034 ccaagggtcatgtttaaagtttagtttcgatttgttgaaagtaag 3626078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 846
Target Start/End: Complemental strand, 2357959 - 2357909
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataatat 846  Q
    ||||||| |||||||| |||||||||| |||||||||||| ||||||||||    
T  2357959 tgatgtaagatttttacatgtcataaaactatttacacgtaagtataatat 2357909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 846
Target Start/End: Complemental strand, 27104826 - 27104772
Alignment:
Q  793 gtgttgatgtaggatttttatatgtcata-aactatttacacgtgagtataatat 846  Q
    ||||||||||| |||||||| |||||||| ||||||||| | |||||||||||||    
T  27104826 gtgttgatgtaagatttttacatgtcatataactatttataagtgagtataatat 27104772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 845
Target Start/End: Original strand, 36468797 - 36468847
Alignment:
Q  796 ttgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  36468797 ttgatgtaagatttttacatgtcataaaactatttacacgtaagtataata 36468847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 20962620 - 20962669
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    |||||||||||||||| || ||||||| |||||||||||| |||||||||    
T  20962620 tgatgtaggatttttacatctcataaaactatttacacgtaagtataata 20962669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 5428 - 5475
Alignment:
Q  141 aaggaaattgattttgttatatgggagatgaagaaatttggagttgaa 188  Q
    ||||||| |||||||||||||||| ||||||| |||||| ||||||||    
T  5428 aaggaaaatgattttgttatatggcagatgaaaaaatttagagttgaa 5475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 845
Target Start/End: Original strand, 13848689 - 13848738
Alignment:
Q  797 tgatgtaggatttttatatgtcataaa-ctatttacacgtgagtataata 845  Q
    ||||||| |||||||| |||||||||| ||||||||| ||||||||||||    
T  13848689 tgatgtaagatttttacatgtcataaaactatttacaagtgagtataata 13848738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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