View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1857R-Insertion-7 (Length: 432)
Name: NF1857R-Insertion-7
Description: NF1857R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857R-Insertion-7 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 432
Target Start/End: Complemental strand, 11928995 - 11928574
Alignment:
| Q |
4 |
catcaaaagcttgtacgatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgat |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11928995 |
catcaaaagtttgtacgatcttacgtgcaagactgtagcagacatgatgaacgacaagacaccagagcagattcgtgagatgttcaacattgtgaatgat |
11928896 |
T |
|
| Q |
104 |
tacagtccacaggaagaggaggaaattcgtagcgaacacccatgggcctatgaataagtatactttaggttttagggcttcactgttttgaatgattatt |
203 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
11928895 |
tacagtccgcaggaagaggaggcaattcgtagcgaacacccatgggcctatgaataactatattttaggtttttgggcttcaccgttatgaatgattatt |
11928796 |
T |
|
| Q |
204 |
atatttgaacatttttgaatcttagtcatggatttgacatgtgggtttgatgttttgtatcattttattattgaaatataactgcaatgcagacttataa |
303 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
11928795 |
atatttgaacattttagaatcttagtcaaggatttgacatgtgggtttgatgttttgtatcgttttattattgaa--ataacttcaatgcagatttataa |
11928698 |
T |
|
| Q |
304 |
cttcttagtacnnnnnnnnnctctaatggtcatatatatgttgtgtcttgtcatgaatcatcatattttttgcaacgcattctaacaactgacattcttt |
403 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||||||||||||| | | |||| ||||||| ||| ||||||| ||| |
|
|
| T |
11928697 |
cttcttagtacttattt----tgaaatggt-ttatatatgttgtgtcttgtcatgaatcatcatatctgtcacaacacattctatcaaatgacattattt |
11928603 |
T |
|
| Q |
404 |
ttatctcactctttactattagtgtttgg |
432 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
11928602 |
ttatctcactctttattattagtgtttgg |
11928574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 11932644 - 11932371
Alignment:
| Q |
5 |
atcaaaagcttgtacgatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgatt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11932644 |
atcaaaagcttgtacgatcttacgtgcaagactgtagcagacatgatgaacggcaagacaccagagcagattcgtgcgatgttcaacattgtgaatgatt |
11932545 |
T |
|
| Q |
105 |
acagtccacaggaagaggaggaaattcgtagcgaacacccatgggcctatgaataagtatactttaggttttagggcttcactgttttgaatgattatta |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
11932544 |
acagtccgcaggaagaggaggaaattcgtagcgaacacccatgggcctatgaataagtatattttaggttttagggcttcactattttgagtgattatta |
11932445 |
T |
|
| Q |
205 |
tatttgaacatttttgaatcttagtcatggatttgacatgtgggtttgatgttttgtatcattttattattgaa |
278 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
11932444 |
tatttgaacattttagaatcttagtcatggatttgacatgtgggtttgatgttttgtatcgtttaattattgaa |
11932371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 11160828 - 11160947
Alignment:
| Q |
20 |
gatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaag |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || |||| ||| || ||| |||||||| ||| ||||||||| | |||||||||| ||| |||||| |
|
|
| T |
11160828 |
gatcttacatgcaagactgtagcagacatgatcaagggtaggacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaag |
11160927 |
T |
|
| Q |
120 |
aggaggaaattcgtagcgaa |
139 |
Q |
| |
|
|||||||| | ||||||||| |
|
|
| T |
11160928 |
aggaggaagtccgtagcgaa |
11160947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 11182340 - 11182421
Alignment:
| Q |
58 |
taagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaa |
139 |
Q |
| |
|
|||||| |||||| ||| ||||||| |||||||||| ||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
11182340 |
taagacgccagaggcgatccgtgagaagttcaacattaagaatgattacagtcccgaggaagagcagaaaattcgtagcgaa |
11182421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 11174890 - 11174971
Alignment:
| Q |
58 |
taagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaa |
139 |
Q |
| |
|
|||||| |||||| ||| ||||||| ||||||||| ||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
11174890 |
taagacgccagaggcgatccgtgagacattcaacattaagaatgattacagtcctgaggaagagcagaaaattcgtagcgaa |
11174971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 11179154 - 11179074
Alignment:
| Q |
59 |
aagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaa |
139 |
Q |
| |
|
||||| |||||| ||||||| |||| ||||||||| ||||||||||| ||| |||||||||||||| ||||| ||||| |
|
|
| T |
11179154 |
aagacaccagaggagattcgcaagattttcaacattaagaatgattacaccccagaggaagaggaggaagttcgtcgcgaa |
11179074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 6948056 - 6947962
Alignment:
| Q |
39 |
tagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgt |
133 |
Q |
| |
|
||||||||||||| || | ||||| || ||| ||||| || |||| |||||||||||||||| |||| |||| ||||||| |||||| ||||| |
|
|
| T |
6948056 |
tagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgcttaccgtcccaaggaagatgaggaagttcgt |
6947962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 24817371 - 24817472
Alignment:
| Q |
4 |
catcaaaagcttgtacgatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgat |
103 |
Q |
| |
|
|||||| | |||||| |||||||| || ||||| ||||||| |||||||| |||| | |||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
24817371 |
catcaagaacttgtatgatcttacatgtaagaccatagcagatatgatgaagaataagccaccagaggagattcgcgagactttcaacattgtgaatgat |
24817470 |
T |
|
| Q |
104 |
ta |
105 |
Q |
| |
|
|| |
|
|
| T |
24817471 |
ta |
24817472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 8992539 - 8992669
Alignment:
| Q |
20 |
gatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaag |
119 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| || || ||||| || ||| ||||||| ||| || |||||| |||||||| | ||| |||||| |
|
|
| T |
8992539 |
gatcttacatgccagactgtggcagacatgatcaaggggaagacacctgaggagattcgcaagacctttaacattaagaatgatttctcaccagaggaag |
8992638 |
T |
|
| Q |
120 |
aggaggaaattcgtagcgaacacccatgggc |
150 |
Q |
| |
|
|||||||| ||||||| ||| ||| |||||| |
|
|
| T |
8992639 |
aggaggaagttcgtagggaaaaccaatgggc |
8992669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University