View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1857_high_10 (Length: 243)

Name: NF1857_high_10
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1857_high_10
NF1857_high_10
[»] chr2 (8 HSPs)
chr2 (1-237)||(16154174-16154410)
chr2 (1-233)||(16175089-16175321)
chr2 (1-237)||(16145576-16145805)
chr2 (4-238)||(7819609-7819844)
chr2 (2-101)||(17707260-17707359)
chr2 (2-101)||(17649876-17649971)
chr2 (122-163)||(2657216-2657257)
chr2 (4-52)||(27720173-27720221)
[»] chr7 (12 HSPs)
chr7 (4-203)||(30821358-30821557)
chr7 (4-235)||(32759887-32760119)
chr7 (4-202)||(20443591-20443789)
chr7 (4-208)||(3809089-3809288)
chr7 (2-86)||(8632066-8632150)
chr7 (120-168)||(12499246-12499294)
chr7 (133-168)||(2960310-2960345)
chr7 (130-168)||(30391981-30392019)
chr7 (2-92)||(39961786-39961875)
chr7 (128-168)||(26299815-26299855)
chr7 (128-168)||(34152035-34152075)
chr7 (128-168)||(34175049-34175089)
[»] chr8 (1 HSPs)
chr8 (2-187)||(28971056-28971240)
[»] chr1 (5 HSPs)
chr1 (2-206)||(25967913-25968114)
chr1 (2-204)||(25963891-25964098)
chr1 (2-50)||(1402533-1402581)
chr1 (45-92)||(51946563-51946610)
chr1 (2-59)||(26583520-26583577)
[»] scaffold0163 (1 HSPs)
scaffold0163 (2-92)||(14583-14672)
[»] chr4 (5 HSPs)
chr4 (4-206)||(19444402-19444597)
chr4 (2-106)||(44494470-44494578)
chr4 (2-90)||(27673903-27673991)
chr4 (2-59)||(1310029-1310086)
chr4 (128-168)||(52801896-52801936)
[»] chr5 (4 HSPs)
chr5 (2-144)||(37699523-37699663)
chr5 (10-123)||(5415170-5415283)
chr5 (130-205)||(15023041-15023117)
chr5 (120-168)||(30775225-30775273)
[»] chr6 (3 HSPs)
chr6 (2-155)||(20725285-20725435)
chr6 (2-92)||(17539067-17539157)
chr6 (119-206)||(3515617-3515705)
[»] chr3 (3 HSPs)
chr3 (4-85)||(39961626-39961707)
chr3 (2-101)||(49016818-49016917)
chr3 (4-72)||(2033333-2033401)
[»] scaffold0229 (1 HSPs)
scaffold0229 (2-50)||(15777-15825)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16154174 - 16154410
Alignment:
Q  1 tacaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16154174 tacaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcat 16154273  T
Q  101 gcggcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccatacccacaatgcgggtatt 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16154274 gcggcggggtaggtacttgagtgcccgtacccgtgcccatacccattcaaatttgcaggtaatcatccgagtccaggcccatacccacaatgcgggtatt 16154373  T
Q  201 tacccgtctatggtaggtatttttgcgggtgcccatt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  16154374 tacccgtctatggtaggtatttttgcgggtgcccatt 16154410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 16175089 - 16175321
Alignment:
Q  1 tacaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  16175089 tacaagtgcatattacaataaataacaaagacttgagattaattaactaactttaatattaaataaaattattgatatagtctatagaatgttcgggcat 16175188  T
Q  101 gcggcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccatacccacaatgcgggtatt 200  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||| |||||||| ||||||||||||||    
T  16175189 gcggcggggtaggtactagagtgtccgtacccgcgcccatacccattcaaatttacaggtaattacccgaatccagacccatacctacaatgcgggtatt 16175288  T
Q  201 tacccgtctatggtaggtatttttgcgggtgcc 233  Q
    ||||||||||| ||||||||||||| |||||||    
T  16175289 tacccgtctatcgtaggtatttttgtgggtgcc 16175321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16145576 - 16145805
Alignment:
Q  1 tacaagtgcatattacaataaataacaaa-gaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggca 99  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||     
T  16145576 tacaagtgcatattacaataaataacaaaagacttgagattaattaactaactttaatattaaataaaattattgatatagtctatataatgtcagggcc 16145675  T
Q  100 tgcggcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccatacccacaatgcgggtat 199  Q
    ||||| |||||||||||| ||||| ||||||||| || |||| ||||||||||||| ||      |||||||||||||||||||||||||||||  ||||    
T  16145676 tgcggtggggtaggtactagagtgcccgtacccgcgctcataaccattcaaatttgtag------acccgagtccaggcccatacccacaatgc--gtat 16145767  T
Q  200 ttacccgtctatggtaggtatttttgcgggtgcccatt 237  Q
    |||| |||||||   || |||||||||| |||||||||    
T  16145768 ttacgcgtctatccaagatatttttgcgagtgcccatt 16145805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 7819609 - 7819844
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatgcg 103  Q
    ||||||||||||||||||||| |||||| ||  |||||||||||||| |||||||| |||||||||||||| |||||| |||||||||| |||||||| |    
T  7819609 aagtgcatattacaataaatatcaaagactttggattaattaactaaatttaatat-aaataaaattattggtatagtatatataatgtgcgggcatggg 7819707  T
Q  104 gcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccata-cccacaatgcgggtattta 202  Q
    ||||||| |||||| ||| | || ||||||  |||||||||||||||||||||||||||| ||| | | |||| |||||| || |||||| ||||||||     
T  7819708 gcggggtgggtactagagagcccatacccgcacccatacccattcaaatttgcaggtaattacctgtgcccagacccatatccaacaatgtgggtatttc 7819807  T
Q  203 cccgtctatggtaggta-tttttgcgggtgcccattg 238  Q
    |||| | ||  | |||| |||||||||||||||||||    
T  7819808 cccgcccatcatgggtattttttgcgggtgcccattg 7819844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 17707359 - 17707260
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatg 101  Q
    |||||| |||||||||||||| | ||| || |||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||| ||||||||    
T  17707359 acaagtacatattacaataaagatcaatgacttgtgattaattaattaactttagtattacataaaattattgatatagtctatataatgtgcgggcatg 17707260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 17649971 - 17649876
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatg 101  Q
    ||||||||||||||||||||||| ||| || || |||||||||||| ||| ||| ||| | |||||   ||||||| | |||||||||||| ||||||||    
T  17649971 acaagtgcatattacaataaatatcaatgacttatgattaattaacaaac-ttagtattacataaa---attgatacaatctatataatgtgcgggcatg 17649876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 2657216 - 2657257
Alignment:
Q  122 tgtccgtacccgtgcccatacccattcaaatttgcaggtaat 163  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  2657216 tgtccatacccgtgtccatacccattcaattttgcaggtaat 2657257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 27720173 - 27720221
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaact 52  Q
    ||||||||||||||||||||| |||| | || ||||||||||| |||||    
T  27720173 aagtgcatattacaataaatatcaaaaacttatgattaattaattaact 27720221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 30821557 - 30821358
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatgcg 103  Q
    ||||||||||||||||||||| |||| | ||  |||||||||||||| |||||||| |||||||||||||| |||||| |||||||||| |||||| | |    
T  30821557 aagtgcatattacaataaatatcaaatactttagattaattaactaaatttaatat-aaataaaattattggtatagtatatataatgtgcgggcagggg 30821459  T
Q  104 gcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccataccc-acaatgcgggtattta 202  Q
    ||||||| ||| || ||||| |||||||||  ||||||||| ||||||||||  |||| | ||||| | ||| |||||||||| ||||||||||||||||    
T  30821458 gcggggtgggtgctagagtgcccgtacccgcacccatacccgttcaaatttgtgggtagttacccgtgcccatgcccatacccaacaatgcgggtattta 30821359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 32760119 - 32759887
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatgcg 103  Q
    ||||||||||||||||||||| |||| | ||  |||||||||||||| |||||||| |||||||||||||| |||||| |||||||||| |||||| | |    
T  32760119 aagtgcatattacaataaatatcaaatactttagattaattaactaaatttaatat-aaataaaattattggtatagtatatataatgtgcgggcagggg 32760021  T
Q  104 gcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccataccc-acaatgcgggtattta 202  Q
    ||||||| ||| || || || |||||||||  ||||||||| ||||||||||  |||||| ||||| | ||| |||||||||| |||||| |||||||||    
T  32760020 gcggggtgggtgctagaatgcccgtacccgcacccatacccgttcaaatttgtgggtaattacccgtgcccatgcccatacccaacaatgtgggtattta 32759921  T
Q  203 cccgtctatggtaggta-tttttgcgggtgccca 235  Q
    | || | ||  | |||| ||||||||||||||||    
T  32759920 ctcgcccatcatgggtattttttgcgggtgccca 32759887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 202
Target Start/End: Original strand, 20443591 - 20443789
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatgcg 103  Q
    ||||||||||||||||||||| |||| | ||  |||||||||||||| |||||||| |||||||||||||| |||||| |||||||||| |||||| | |    
T  20443591 aagtgcatattacaataaatatcaaatactttagattaattaactaaatttaatat-aaataaaattattggtatagtatatataatgtgcgggcagggg 20443689  T
Q  104 gcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccataccc-acaatgcgggtattta 202  Q
    ||||||| ||| || || || |||||||||  ||||||||| ||||||||||  |||||| ||||| | ||| |||||||||| |||||| |||||||||    
T  20443690 gcggggtgggtgctagaatgaccgtacccgcacccatacccgttcaaatttgtgggtaattacccgtgcccatgcccatacccaacaatgagggtattta 20443789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 3809288 - 3809089
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatgcg 103  Q
    ||||||||||||||||||||| |||| | ||     ||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||| | |    
T  3809288 aagtgcatattacaataaatatcaaatactt-----taattaactaaatttaatat-aaataaaattattggtatagtatatataatgttcgggcagggg 3809195  T
Q  104 gcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccata-cccacaatgcgggtattta 202  Q
    || |||| ||| || ||||| ||||||| |   |||||||| || |||||||  | |||| ||||  | ||| |||||||  | ||||||||||||||||    
T  3809194 gcagggtgggtgctagagtgcccgtacctgcatccatacccgtttaaatttgtggataattacccatgcccatgcccatattcaacaatgcgggtattta 3809095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 8632066 - 8632150
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctata 86  Q
    |||||||||  |||||||||||| ||||||  || || |||||||||||||||| ||| |||||||||||||  |||| ||||||    
T  8632066 acaagtgcaagttacaataaatatcaaagatatgggaataattaactaactttattattaaataaaattatttctatactctata 8632150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 12499294 - 12499246
Alignment:
Q  120 agtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||| ||||    
T  12499294 agtgtccatacccgtgcccatacccatacaaatttgcgggtaattaccc 12499246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 2960310 - 2960345
Alignment:
Q  133 gtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    ||||||||||||||||||||||||||||||| ||||    
T  2960310 gtgcccatacccattcaaatttgcaggtaattaccc 2960345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 30391981 - 30392019
Alignment:
Q  130 cccgtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  30391981 cccgtgcccatactcattcaaatttgcaggtaattaccc 30392019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 39961786 - 39961875
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgt 92  Q
    |||||||||| |||||| |||||  ||||| ||  |||||||||||||| |||| | | | |||||||||||| ||||||||||| |||||    
T  39961786 acaagtgcatgttacaacaaatat-aaagatttaggattaattaactaagtttagtgttacataaaattattggtatagtctataaaatgt 39961875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 26299815 - 26299855
Alignment:
Q  128 tacccgtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    ||||||||||||||||||| ||||||||| |||||| ||||    
T  26299815 tacccgtgcccatacccatacaaatttgcgggtaattaccc 26299855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 34152075 - 34152035
Alignment:
Q  128 tacccgtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    |||||||||||||||||||  ||||||||||||||| ||||    
T  34152075 tacccgtgcccatacccatataaatttgcaggtaattaccc 34152035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 34175049 - 34175089
Alignment:
Q  128 tacccgtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    |||||||||||||||||||  ||||||||||||||| ||||    
T  34175049 tacccgtgcccatacccatataaatttgcaggtaattaccc 34175089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 28971056 - 28971240
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatg 101  Q
    |||||||||||||||||||||||  ||||| ||  |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  28971056 acaagtgcatattacaataaatatgaaagacttcggattaattaactaaatttaatat-aaataaaattattggtatagtctatataatgtgcgggcatg 28971154  T
Q  102 cggcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccataccca 187  Q
     ||| |||| |||||| ||||| | |||||||| ||| ||||| ||||||||||| || ||| ||||  | | |||||||||||||    
T  28971155 gggcagggtgggtactagagtgccagtacccgtacccgtaccctttcaaatttgcgggcaattacccatgcctaggcccataccca 28971240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 25968114 - 25967913
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatg 101  Q
    ||||||||||||||||||||||| |||||| ||   ||||||||||||  |||||||| |||||||||||||| |||||||||||||||||  |||||||    
T  25968114 acaagtgcatattacaataaatatcaaagacttaatattaattaactatatttaatat-aaataaaattattggtatagtctatataatgtatgggcatg 25968016  T
Q  102 cggcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccataccc-acaatgcgggtatt 200  Q
     |||||    |  ||| ||||| || |||||   ||||||||| ||||||||||| || ||| ||||| | |||||||||||||| ||| ||| ||||||    
T  25968015 gggcgg---tgacactagagtgcccatacccacacccatacccgttcaaatttgcgggcaattacccgtgcccaggcccatacccaacactgcaggtatt 25967919  T
Q  201 tacccg 206  Q
    ||||||    
T  25967918 tacccg 25967913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 25963891 - 25964098
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaatt----aactaactttaatatcaaataaaattattgatatagtctatataatgttcggg 97  Q
    |||||||||||||||||||| || |||||| ||   |||||||    |||| |||||||||| | ||||||||||||||||| |||||||||||| ||||    
T  25963891 acaagtgcatattacaataactatcaaagacttaatattaattaacaaacttactttaatattacataaaattattgatataatctatataatgtgcggg 25963990  T
Q  98 catgcggcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccatac-ccacaatgcggg 196  Q
    |||| || | ||| | || | ||||| |  |||| | | |||||||| ||||||||| || ||||| ||||||| || ||||||||| | |||||| |||    
T  25963991 catggggtgaggtggatattagagtgccaatacctgcgtccatacccgttcaaattttcaagtaattacccgagccctggcccatacacaacaatgtggg 25964090  T
Q  197 tatttacc 204  Q
    ||||||||    
T  25964091 tatttacc 25964098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 1402533 - 1402581
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaa 50  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||||    
T  1402533 acaagtgcatattacaataaatatcaaagacttcggattaattaactaa 1402581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 51946610 - 51946563
Alignment:
Q  45 aactaactttaatatcaaataaaattattgatatagtctatataatgt 92  Q
    |||||| |||||||||| |||||||||||| |||||| ||||||||||    
T  51946610 aactaattttaatatcacataaaattattgttatagtatatataatgt 51946563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 26583577 - 26583520
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatat 59  Q
    |||||||||||| ||||||||||  ||||| ||  |||||||||||||| ||||||||    
T  26583577 acaagtgcatataacaataaatattaaagacttaagattaattaactaattttaatat 26583520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 14583 - 14672
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgt 92  Q
    ||||||||||||||||||||||| |||||| ||  |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  14583 acaagtgcatattacaataaatatcaaagacttaggattaattaactaaatttaatat-aaataaaattattggtatagtctatataatgt 14672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 19444597 - 19444402
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatgcg 103  Q
    ||||||||||||||||||||| |||| | ||  ||||||| |||||| |||||||| |||||||||||||| |||||| |||||||||| |||||| | |    
T  19444597 aagtgcatattacaataaatatcaaatactttggattaat-aactaaatttaatat-aaataaaattattggtatagtatatataatgtgcgggcagggg 19444500  T
Q  104 gcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccata-cccacaatgcgggtattta 202  Q
    ||||||| ||| || |||||      ||||  | ||||||||||||||||||  |||||| | ||| | ||| ||||||| || ||||||||||||||||    
T  19444499 gcggggtgggtgctagagtg------cccgcactcatacccattcaaatttgtgggtaattatccgtgcccatgcccatatccaacaatgcgggtattta 19444406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 44494578 - 44494470
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaact----ttaatatcaaataaaattattgatatagtctatataatgttcggg 97  Q
    |||| |||||||||||||||||| |||||||||  ||||||||||||||||    ||||||| |||||| ||||||| |||| |||||||||||| ||||    
T  44494578 acaaatgcatattacaataaatatcaaagaattaagattaattaactaactaactttaatattaaataatattattggtatattctatataatgtgcggg 44494479  T
Q  98 catgcggcg 106  Q
    |||| ||||    
T  44494478 catggggcg 44494470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 27673991 - 27673903
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataat 90  Q
    |||||||||||||| |||||||| |||||| ||   |||||||||||||||||||||| | || ||||||||| |||||||||||||||    
T  27673991 acaagtgcatattataataaatatcaaagatttaatattaattaactaactttaatattacatcaaattattggtatagtctatataat 27673903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 1310086 - 1310029
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatat 59  Q
    |||| |||||||||||||||||| ||| || ||  |||||||||||||| ||||||||    
T  1310086 acaaatgcatattacaataaatatcaaggacttaagattaattaactaattttaatat 1310029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 52801936 - 52801896
Alignment:
Q  128 tacccgtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    |||||||||||||||||||| |||||||| |||||| ||||    
T  52801936 tacccgtgcccatacccattaaaatttgcgggtaattaccc 52801896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 37699663 - 37699523
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatg 101  Q
    ||||||||||||||||||||||| | |||| ||  | |||||||||||| ||||||||| ||||||||||||| ||||||||||||| ||| |||| |||    
T  37699663 acaagtgcatattacaataaatatctaagacttaggtttaattaactaaatttaatatc-aataaaattattggtatagtctatatagtgtgcggggatg 37699565  T
Q  102 cggcggggtaggtacttgagtgtccgtacccgtgcccataccc 144  Q
     |||||||| || | | ||||| |||||||||  |||||||||    
T  37699564 -ggcggggtgggcaatagagtgcccgtacccgcacccataccc 37699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 5415170 - 5415283
Alignment:
Q  10 atattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatgcggcgggg 109  Q
    ||||||||||||||| |||||| ||  ||||||||||| ||||||||||| | |||||||||||| |||||| | |||||||| |||||||| | |||||    
T  5415170 atattacaataaatatcaaagactttagattaattaacaaactttaatattacataaaattattggtatagtgtttataatgtgcgggcatgagacgggg 5415269  T
Q  110 taggtacttgagtg 123  Q
    | | |||| |||||    
T  5415270 tggatactagagtg 5415283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 15023117 - 15023041
Alignment:
Q  130 cccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccatacccacaa-tgcgggtatttaccc 205  Q
    ||||||||||| ||| || || |||||||||||| ||||||| ||   |||||||||| || |||||||||||||||    
T  15023117 cccgtgcccatgcccgttaaagtttgcaggtaattacccgagcccgtccccatacccataagtgcgggtatttaccc 15023041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 30775225 - 30775273
Alignment:
Q  120 agtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcaccc 168  Q
    ||||||| |||||||||||||||||||  |||||||| |||||| ||||    
T  30775225 agtgtccatacccgtgcccatacccatataaatttgcgggtaattaccc 30775273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 20725285 - 20725435
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatg 101  Q
    |||||||||||||||||||||||  ||| | ||   ||||||||||||||||| |||| ||||||||||||| | || ||||||||||||| |  |||||    
T  20725285 acaagtgcatattacaataaatataaaaaactta--attaattaactaactttcatat-aaataaaattattcacatggtctatataatgtgcaagcatg 20725381  T
Q  102 cggcggggtaggtacttgagtgtccgtacccgtgcccatacccattcaaatttg 155  Q
     || ||||| || ||| ||||| |  ||||||  ||||||||| ||||||||||    
T  20725382 gggtggggtgggcactagagtgccaatacccgcacccatacccgttcaaatttg 20725435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 17539067 - 17539157
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgt 92  Q
    |||||||||||||||||||||||  ||||| || ||||||||||||||| |||  ||| | |||||||||| | |||||| |||| |||||    
T  17539067 acaagtgcatattacaataaatattaaagatttatgattaattaactaattttggtattacataaaattatagttatagtttatacaatgt 17539157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 3515705 - 3515617
Alignment:
Q  119 gagtgtccgtacccgtgcccatacccattcaaatttgcaggtaatcacccgagtccaggcccatacccacaa-tgcgggtatttacccg 206  Q
    ||||| |||| ||||||||||| ||| || || ||||| |||||| ||||||| ||   |||||||||| || ||||||||||||||||    
T  3515705 gagtgcccgtgcccgtgcccatgcccgttaaagtttgcgggtaattacccgagcccgcccccatacccataagtgcgggtatttacccg 3515617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 39961626 - 39961707
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctat 85  Q
    ||||||||| ||||||||||| |||||| ||  |||||||||||||| |||| ||||| ||||||| || | ||||||||||    
T  39961626 aagtgcatactacaataaatatcaaagacttaggattaattaactaattttagtatcatataaaatcataggtatagtctat 39961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 49016917 - 49016818
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattattgatatagtctatataatgttcgggcatg 101  Q
    ||||||||||||||||||||||| |||| | |   |||||||||||||| |||| ||| | ||||||||||   |||||| | |||||||| || |||||    
T  49016917 acaagtgcatattacaataaatatcaaatactaaggattaattaactaattttagtattacataaaattataattatagtgtttataatgtgcgagcatg 49016818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 2033401 - 2033333
Alignment:
Q  4 aagtgcatattacaataaataacaaagaattgtgattaattaactaactttaatatcaaataaaattat 72  Q
    |||||||||||||||||||||  |||   || | ||||||||||||| |||||||| | ||||||||||    
T  2033401 aagtgcatattacaataaatataaaaagcttataattaattaactaattttaatattatataaaattat 2033333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 15825 - 15777
Alignment:
Q  2 acaagtgcatattacaataaataacaaagaattgtgattaattaactaa 50  Q
    ||||||||||||||||||||||| |||||| ||  ||||||||||||||    
T  15825 acaagtgcatattacaataaatatcaaagacttcggattaattaactaa 15777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University