View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857_high_2 (Length: 486)
Name: NF1857_high_2
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 37 - 470
Target Start/End: Original strand, 2624485 - 2624917
Alignment:
| Q |
37 |
atgttctaataaaacccacaatgcacgggttaaataactagtaatagaatatagggggttaggatggaataagaatatcaatactatggaaaaccttatt |
136 |
Q |
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| T |
2624485 |
atgttctaataaaacccgcaatgcacgggttaaataactagtaatagaatatagggggttagggtggaataagaatatcaatactacggaaaaccttatt |
2624584 |
T |
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| Q |
137 |
tattttccgccgaacttatgacattataaagtaatttctattaaataagaaaattgtacattgagatatatggtcaccaaactcgttaaggggggcattg |
236 |
Q |
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| T |
2624585 |
tattttccgccgaacttatgacattataaagtaatttctattaaataagaaacttgtacat-gagatatatggtcaccaaactcgttaaggggggcattg |
2624683 |
T |
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| Q |
237 |
ttggtggcaagagcaagagataatgttttgaaatcaatttcaaacaaaacaacatacattctttttgatatggtcactttaataacttccgataaaacta |
336 |
Q |
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| T |
2624684 |
ttggtggcaagagcaagagataatgttttgaaatcaatttcaaacaaaacaacatacattctgtttgatatggtcactttaataacttccgataaaacta |
2624783 |
T |
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| Q |
337 |
taactttggcttctagagcggtggtataaaagtaggaatgatatgattttcccaacaaaagtaatcaggtagtctcaaaaacatatatcatacctaaaga |
436 |
Q |
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| T |
2624784 |
taactttggcttctagagcggtggtagaaaagtaggaatgatatgattttcccaacaaaagtaatcaggtagtctcaaaaacatatatcatacctaaaga |
2624883 |
T |
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| Q |
437 |
tagattttttgttggaaaaggtggcgttcacatt |
470 |
Q |
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| T |
2624884 |
tagattttttgttggaaaaggtggcgttcacatt |
2624917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 28000388 - 28000485
Alignment:
| Q |
221 |
gttaaggggggcattgttggtggcaagagcaagagataatgttttgaaatcaatttcaaacaaaacaacatacattctttttgatatggtcactttaa |
318 |
Q |
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| T |
28000388 |
gttaagtggagcattgttggtggcgagagcatcaaataaagttttggaatcagtttcaaacaaaacaacatgcattccatttgatatgaccactttaa |
28000485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 27950102 - 27950190
Alignment:
| Q |
208 |
ggtcaccaaactcgttaaggggggcattgttggtggcaagagcaagagataatgttttgaaatcaatttcaaacaaaacaacatacatt |
296 |
Q |
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| T |
27950102 |
ggtcatcaaactcgttaaaaggggaattgttggtggtgagaccatcaaataaagttctggaatcattttcaaacaaaacaacatgcatt |
27950190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 5691719 - 5691649
Alignment:
| Q |
254 |
agataatgttttgaaatcaatttcaaacaaaacaacatacattctttttgatatggtcactttaataactt |
324 |
Q |
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| T |
5691719 |
agataatgatttgtaataagtttcaaacaaaacaacgtacattccgtttgatatggccactttgataactt |
5691649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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