View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1857_high_6 (Length: 351)
Name: NF1857_high_6
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857_high_6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 9157846 - 9158177
Alignment:
| Q |
4 |
cataggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaataaataattacaccccaaagaatcc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
9157846 |
cataggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatcc |
9157945 |
T |
|
| Q |
104 |
gtggaattaggaaaatcagaagcttctatacttatatttctcatcataggtggactgtcaacttgacaacaaccaatacccgaacatgttccgttttcta |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9157946 |
gtggaattaggaaaatcagaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttcta |
9158045 |
T |
|
| Q |
204 |
ttctgtttcgattaccattacatcttgtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaaccaaccgt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9158046 |
ttctgtttcgattaccattacatcttgtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaaccaaccgt |
9158145 |
T |
|
| Q |
304 |
tacgaacttgtttttcttgcttgatatggtga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
9158146 |
tacgaacttgtttttcttgcttgatatggtga |
9158177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 9220300 - 9220622
Alignment:
| Q |
8 |
ggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaataaataattacaccccaaagaatccgtgg |
107 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
9220300 |
ggaagcatcttataaggaaaattatccaaatgagaaacagtaaaattataggatccatctttaacaacaaatgaataactacaccccaaagaatccgtgg |
9220399 |
T |
|
| Q |
108 |
aattaggaaaatcagaagcttctatacttatatttctcatcataggtggactgtcaacttgacaacaaccaatacccgaacatgttccgttttctattct |
207 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9220400 |
aattaggaaaatcagaaacttgtacacttatattcctcatcatatgtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttcaatttg |
9220499 |
T |
|
| Q |
208 |
gtttcgattaccattacatcttgtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaaccaaccgttacg |
307 |
Q |
| |
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|| |||||||||| ||||||||| | ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| | |
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| T |
9220500 |
attccgattaccataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatg |
9220599 |
T |
|
| Q |
308 |
aacttgtttttcttgcttgatat |
330 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
9220600 |
aacttgttttcagtgcttgatat |
9220622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 9163964 - 9164291
Alignment:
| Q |
7 |
aggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaataaataattacaccccaaagaatccgtg |
106 |
Q |
| |
|
||||||| ||| ||| ||||| ||||||||||| || || ||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||| |
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|
| T |
9163964 |
aggaagcatcttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtg |
9164063 |
T |
|
| Q |
107 |
gaattaggaaaatcagaagcttctatacttatatttctcatcataggtggactgtcaacttgacaacaaccaatacccgaacatgttccgttttctattc |
206 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
9164064 |
gaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattc |
9164163 |
T |
|
| Q |
207 |
tgtttcgattaccattacatcttgtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaaccaaccgttac |
306 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||| | |||||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
9164164 |
gatttcgattaccgttacatcttgttaagcaaccggttgaatatgtttcttgattgtaaatgctgttgagataaccataactatcacaaccaacagttac |
9164263 |
T |
|
| Q |
307 |
gaacttgtttttcttgcttgatatggtg |
334 |
Q |
| |
|
|||||||||| ||| |||||||||||| |
|
|
| T |
9164264 |
aaacttgttttcctttcttgatatggtg |
9164291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 9114598 - 9114289
Alignment:
| Q |
22 |
aggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaataaataattacaccccaaagaatccgtggaattaggaaaatca |
121 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||||| |||| |||||||||||| |||| |||| | |||||| || |||||||| |||| || |
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|
| T |
9114598 |
aggaaatttgtccaaatgagaaacagaaaaattataagctccatttttaacaacaaaagaatatctacatctcaaagattcattggaattaaaaaaagca |
9114499 |
T |
|
| Q |
122 |
gaagcttctatacttatatttctcatcataggtggactgtcaacttgacaacaaccaatacccgaacatgttccgttttctattctgtttcgattaccat |
221 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| | ||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| | |
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|
| T |
9114498 |
aaagcttctatagttatattcctcatcttaggtggaatatcaacttcacaacaaccaataccagaacatgttccattttcaattctctttcgattaccgt |
9114399 |
T |
|
| Q |
222 |
tacatcttgtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtttttctt |
321 |
Q |
| |
|
||||| |||| | ||||||| | ||||||||||| |||| ||| | ||||||||| ||||||||| ||||||||||| |||| ||||||||||| || |
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|
| T |
9114398 |
tacatattgttaagcaaccgatggaatatgtttccttgtcgtaaatgctgttgagaataccgtaactatcacaaccaactgttaagaacttgttttcttt |
9114299 |
T |
|
| Q |
322 |
gcttgatatg |
331 |
Q |
| |
|
|| ||||||| |
|
|
| T |
9114298 |
gcgtgatatg |
9114289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 317
Target Start/End: Original strand, 9175803 - 9176116
Alignment:
| Q |
4 |
cataggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaataaataattacaccccaaagaatcc |
103 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||| |||| |||||||||||| ||| |||| |||||||| || |
|
|
| T |
9175803 |
cataggaagcctctcataaggaaaattgtccaaatcagaaacagtgaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcg |
9175902 |
T |
|
| Q |
104 |
gtggaattaggaaaatcagaagcttctatacttatatttctcatcataggtggactgtcaacttgacaacaaccaatacccgaacatgttccgttttcta |
203 |
Q |
| |
|
| ||| || ||| |||||||| |||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
9175903 |
tttaaatcgagataattagaagcttgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcaa |
9176002 |
T |
|
| Q |
204 |
ttctgtttcgattaccattacatcttgtcaggcaaccggttgaatatgtttctttgttgtatacactgttgagataaccgtaactgtcacaaccaaccgt |
303 |
Q |
| |
|
||||||||||| |||| || ||| |||| | ||| ||||| ||||| ||||||||| ||| | || ||||| |||| ||||| ||||||||| || |
|
|
| T |
9176003 |
ttctgtttcgagtaccgttgcatattgttaagcagccggtgtaatatctttctttgtcgtaaatgcttctgagaacaccgagactgttacaaccaactgt |
9176102 |
T |
|
| Q |
304 |
tacgaacttgtttt |
317 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
9176103 |
taagaacttatttt |
9176116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 9202835 - 9203086
Alignment:
| Q |
7 |
aggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaataaataattacaccccaaagaatccgtg |
106 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||| ||||| ||| ||||||||||| |||| |||||||||||| ||| |||| |||||||| || | |
|
|
| T |
9202835 |
aggaagcttctcagaaggaaaattgtccaaatcagaaacagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgttt |
9202934 |
T |
|
| Q |
107 |
gaattaggaaaatcagaagcttctatacttatatttctcatcataggtggactgtcaacttgacaacaaccaatacccgaacatgttccgttttctattc |
206 |
Q |
| |
|
||| || ||| ||||| || |||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
9202935 |
aaatcgagataattagaagattgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcgattc |
9203034 |
T |
|
| Q |
207 |
tgtttcgattaccattacatcttgtcaggcaaccggttgaatatgtttcttt |
258 |
Q |
| |
|
|||||||| |||| | ||| |||| | ||||||||| || |||||||||| |
|
|
| T |
9203035 |
tgtttcgagtaccgtcgcatattgttaagcaaccggtgtaaaatgtttcttt |
9203086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 9146963 - 9147010
Alignment:
| Q |
288 |
tgtcacaaccaaccgttacgaacttgtttttcttgcttgatatggtga |
335 |
Q |
| |
|
||||||||||||| ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
9146963 |
tgtcacaaccaactgttacaaacttgttttgcttgcttgatatggtga |
9147010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 1840385 - 1840314
Alignment:
| Q |
124 |
agcttctatacttatatttctcatcataggtggactgtcaacttgacaacaaccaatacccgaacatgttcc |
195 |
Q |
| |
|
||||| ||||||||||| |||||| |||| ||| | |||||||| ||||| || ||||||||||||||||| |
|
|
| T |
1840385 |
agcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttcc |
1840314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 1817723 - 1817772
Alignment:
| Q |
268 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtttt |
317 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||| ||| ||||||| |
|
|
| T |
1817723 |
actgttgagatatccgtaactgtcgcaaccaacggttatgaatttgtttt |
1817772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 37566936 - 37566877
Alignment:
| Q |
268 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtttttcttgcttga |
327 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||| ||| ||||||| | ||||||| |
|
|
| T |
37566936 |
actgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtgcttga |
37566877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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