View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1857_high_7 (Length: 341)
Name: NF1857_high_7
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857_high_7 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 25 - 341
Target Start/End: Original strand, 34933612 - 34933926
Alignment:
| Q |
25 |
cctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctggagatctt |
124 |
Q |
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| T |
34933612 |
cctttgagaaccgggttttggattttgatttgtttgaggtaaaactcaacaagttgtcttgatgttaactgctttctttggaaggcaagctggagatctt |
34933711 |
T |
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| Q |
125 |
gcacagttgcttccttgattgagaatccactagccaaggttattgttgatagcatagaagggagtgtaactagaagaaggatcatagagaggaattgaaa |
224 |
Q |
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| T |
34933712 |
gcacagttgcttccttgattgagaatccactagccaaggttgttgttgatagcatagaagggagtgtaactagaagaacgatcatagagaggaattgaaa |
34933811 |
T |
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| Q |
225 |
gaaagagctagcacatgctgagtccatgagtcttcaaagttgaaagttgaaactaagcatctataatgcagtattctaatctatatatactagtgggtat |
324 |
Q |
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| T |
34933812 |
gaaagagctagcacatgctgagtccatgagtcttcaaagttgaaagttgaaactaagcatctataatgcagtattctaatc--tatatactagtggatat |
34933909 |
T |
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| Q |
325 |
atttttgaattgaagtg |
341 |
Q |
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| T |
34933910 |
atttttgaattgaagtg |
34933926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 34929515 - 34929746
Alignment:
| Q |
19 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
118 |
Q |
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| T |
34929515 |
aagacacctttgagaactgggttttggatattgatttgtttgaggtaaaactcaacaagttgtcttgatgttaactgctttctttggaaagcaagttgga |
34929614 |
T |
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| Q |
119 |
gatcttgcacagttgcttccttgattgagaatccactagccaaggttattgttgatagcatagaagggagtgtaactagaagaaggatcatagagaggaa |
218 |
Q |
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| T |
34929615 |
gatcttgcacagttgcttccttgattgagattccacttgccaagg---ttgttgatagcatagaagagagtgtaactagtagaagggttatagaaaggaa |
34929711 |
T |
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| Q |
219 |
ttgaaagaaagagctagcacatgctgagtccatga |
253 |
Q |
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| T |
34929712 |
ttgaaagaaagagctagcacatgctgaggccatga |
34929746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 34913191 - 34913337
Alignment:
| Q |
19 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
118 |
Q |
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| T |
34913191 |
aagactccttttagaactgggttttgtattttgatttggttgaggtaaaactcaacaagttgtcttgatgttaattggtttctttggaaagctagttgaa |
34913290 |
T |
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| Q |
119 |
gatcttgcacagttgcttccttgattgagaatccactagccaaggtt |
165 |
Q |
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| T |
34913291 |
gatcttgcacagttgcttccttgattgagaattcactggccaaggtt |
34913337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 34899352 - 34899483
Alignment:
| Q |
19 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||| ||||||| || || |||| |
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| T |
34899352 |
aagacacctttgagaactgggttttggatattgatttggttgagatagaactcaacaagctgtcttgatgttaactgttttgtttggaaagctagttgga |
34899451 |
T |
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| Q |
119 |
gatcttgcacagttgcttccttgattgagaat |
150 |
Q |
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| T |
34899452 |
gatcttgcacggttgcttccttgactgagaat |
34899483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 34922777 - 34922908
Alignment:
| Q |
19 |
aagactcctttgagaactgggttttggatattgatttggttgaggtagaattcaacaagttgtcttgatgttaactgctttctttggaaggcaagctgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| || ||| |||| || || || || | |
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| T |
34922777 |
aagactcctttgagaactgggttttggatattgatttgattgagatagaactcaacaagctgtcttgatgttaattggtttgtttgaaaagctagttgaa |
34922876 |
T |
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| Q |
119 |
gatcttgcacagttgcttccttgattgagaat |
150 |
Q |
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| T |
34922877 |
gatcttgtactgttgcttcctcaattgagaat |
34922908 |
T |
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