View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1857_low_3 (Length: 448)
Name: NF1857_low_3
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1857_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 434
Target Start/End: Complemental strand, 30275533 - 30275107
Alignment:
| Q |
10 |
ataatactaggacataacatat--ttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatgggaaatttagttatta |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275533 |
ataatactaggacataacatatatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatgggaaatttagttatta |
30275434 |
T |
|
| Q |
108 |
gcggactcaaaaatctctttaatgagtatattatcatacttgaaagagcccttacttatgaaacaagtgcaacggagcaagatagttctagaatcaagtt |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275433 |
gcggactcaagaatctctttaatgagtatattatcatacttgaaagagcccttacttatgaaacaagtgcaacggagcaagatagttctagaatcaagtt |
30275334 |
T |
|
| Q |
208 |
acctgagtcacttagacaacaggtttctattttggccaatttgtcaacattggtgcagtttctctctaccatggtcaaagatatcttcagcatggattca |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275333 |
acctgagtcacttacacaacaggtttctattttggccaatttgtcaacattggtgcagtttctctctaccatggtcaaagatatcttcagcatggattca |
30275234 |
T |
|
| Q |
308 |
caattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagggcttcaataagttgagaaatgtgttct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275233 |
caattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagagggcttcaataagttgagaaatgtgttct |
30275134 |
T |
|
| Q |
408 |
gccagcaattaattctcagagctttgt |
434 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30275133 |
gccagcaattaattctcagagctttgt |
30275107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 7778844 - 7778693
Alignment:
| Q |
10 |
ataatactaggacataacatatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatgggaaatttagttattagc |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
7778844 |
ataatactagtacataacatatttgattgacaataatcaggccgttgcagaagacatttctccattagttgaacttgaaat-ggaaatttagtcattagt |
7778746 |
T |
|
| Q |
110 |
ggactcaa-aaatctctt---taatgagtatattatcatacttgaaagagccc |
158 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7778745 |
ggactcaaggaatctctttaataatgagtatattatcatacttgaaagagccc |
7778693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University