View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1857_low_4 (Length: 389)

Name: NF1857_low_4
Description: NF1857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1857_low_4
NF1857_low_4
[»] chr8 (8 HSPs)
chr8 (1-366)||(5922342-5922708)
chr8 (129-214)||(9217206-9217291)
chr8 (10-57)||(45403332-45403379)
chr8 (5-57)||(11879898-11879950)
chr8 (5-57)||(11897314-11897366)
chr8 (11-57)||(7489062-7489108)
chr8 (11-57)||(24414066-24414112)
chr8 (10-54)||(40541602-40541646)
[»] chr6 (12 HSPs)
chr6 (10-57)||(7223818-7223865)
chr6 (8-57)||(3573678-3573728)
chr6 (11-57)||(22498219-22498265)
chr6 (10-56)||(31108458-31108504)
chr6 (8-57)||(7918129-7918178)
chr6 (8-57)||(17103496-17103545)
chr6 (10-57)||(11327341-11327388)
chr6 (10-57)||(19748636-19748683)
chr6 (11-57)||(26053075-26053121)
chr6 (11-57)||(26073128-26073174)
chr6 (10-57)||(17543509-17543556)
chr6 (5-54)||(15527892-15527941)
[»] chr1 (15 HSPs)
chr1 (10-57)||(21846053-21846100)
chr1 (5-57)||(9954775-9954827)
chr1 (120-210)||(39783865-39783959)
chr1 (11-57)||(14074262-14074308)
chr1 (5-57)||(13100488-13100540)
chr1 (111-214)||(15382159-15382262)
chr1 (10-57)||(25146547-25146594)
chr1 (8-59)||(13276036-13276084)
chr1 (5-54)||(17197311-17197360)
chr1 (10-57)||(9351842-9351889)
chr1 (10-53)||(9954816-9954859)
chr1 (10-57)||(18304597-18304644)
chr1 (11-57)||(16125234-16125280)
chr1 (10-59)||(16434812-16434861)
chr1 (10-59)||(17869527-17869576)
[»] scaffold0016 (1 HSPs)
scaffold0016 (10-57)||(56204-56251)
[»] chr7 (9 HSPs)
chr7 (10-57)||(17811651-17811698)
chr7 (10-57)||(5058831-5058878)
chr7 (10-57)||(24989553-24989600)
chr7 (13-57)||(44944624-44944668)
chr7 (11-57)||(20570664-20570710)
chr7 (18-59)||(4247667-4247708)
chr7 (9-57)||(10285682-10285730)
chr7 (10-54)||(25842513-25842557)
chr7 (13-57)||(26281169-26281213)
[»] chr5 (8 HSPs)
chr5 (10-57)||(6852345-6852392)
chr5 (10-57)||(18844018-18844065)
chr5 (10-57)||(41688445-41688492)
chr5 (13-57)||(23172223-23172267)
chr5 (10-57)||(27339966-27340013)
chr5 (10-55)||(18051314-18051359)
chr5 (8-57)||(43235169-43235218)
chr5 (10-54)||(15051879-15051923)
[»] chr4 (3 HSPs)
chr4 (10-57)||(9770415-9770462)
chr4 (5-57)||(23064740-23064792)
chr4 (9-57)||(7045246-7045294)
[»] chr3 (11 HSPs)
chr3 (11-57)||(24649528-24649574)
chr3 (5-57)||(29067574-29067626)
chr3 (111-214)||(25296557-25296659)
chr3 (10-57)||(8592178-8592225)
chr3 (10-57)||(28746079-28746126)
chr3 (10-57)||(39428210-39428257)
chr3 (11-57)||(24619976-24620022)
chr3 (9-57)||(6860990-6861038)
chr3 (10-54)||(8560239-8560283)
chr3 (11-59)||(13006129-13006176)
chr3 (10-54)||(22355848-22355892)
[»] scaffold0186 (1 HSPs)
scaffold0186 (5-54)||(8739-8788)
[»] scaffold0017 (1 HSPs)
scaffold0017 (10-57)||(38306-38353)
[»] chr2 (9 HSPs)
chr2 (10-57)||(20064026-20064073)
chr2 (10-55)||(21869102-21869147)
chr2 (10-54)||(20034004-20034048)
chr2 (10-57)||(25538924-25538971)
chr2 (10-51)||(27523881-27523922)
chr2 (10-59)||(31237753-31237802)
chr2 (10-54)||(974642-974686)
chr2 (9-57)||(8428524-8428572)
chr2 (9-57)||(19245891-19245939)
[»] scaffold2084 (1 HSPs)
scaffold2084 (10-54)||(131-175)
[»] scaffold0061 (1 HSPs)
scaffold0061 (13-57)||(76088-76132)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 5922342 - 5922708
Alignment:
Q  1 acatgttctgattttgctattccctttcgacctggagtaaagtcccgattttgacaatccagcaatataaaactaataaatttatgagttttgtgcatta 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5922342 acatgttctgattttgctattccctttcgacctgaagtaaagtcccgattttgacaacccagcaatataaaactaataaatttatgagttttctgcatta 5922441  T
Q  101 gtattagcttgagcactgttatttatttagatggaaattgtcccgatcagattgcgaatagcagttaaccaattacctctttgcctgcccacaaaacaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5922442 gtattagcttgagcactgttatttatttagatggaaattgtcccgatcagattgcgaatagcagttaaccaattacctctttgcctggccacaaaacaag 5922541  T
Q  201 gaaggtggtgctat-nnnnnnnnttgagtagaaaaactgtggtgaaactttcgcatggaaatctttcgtgataagcagcattacgctattagtttttatt 299  Q
    ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  5922542 gaaggtggtgctataaaaaaaatttgagtagaaaaactgtggtgaaactttcgcatggaaatctgtcgtgataagcagcattatgctatcagtttttatt 5922641  T
Q  300 ttgttttgtgtccatttgattaccatcttagttgtgaacatgtgtaatacaataaaccttcacatac 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5922642 ttgttttgtgtccatttgattaccatcttagttgtgaacatgtgtaatacaataaaccttcacatac 5922708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 9217291 - 9217206
Alignment:
Q  129 agatggaaattgtcccgatcagattgcgaatagcagttaaccaattacctctttgcctgcccacaaaacaaggaaggtggtgctat 214  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||| || | | || ||| |||||||||||| ||| |||||||||    
T  9217291 agatgaaaattgtcccgttcagattgcgaatagcaattaaccaatcacatttctgtctggccacaaaacaagaaagatggtgctat 9217206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 45403332 - 45403379
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||    
T  45403332 gattttgctattccctttcgacgtgaaataaagtcccgattttgacaa 45403379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 11879898 - 11879950
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||| |||||| ||||||||||| |||||| |||||| |||||||||||||||    
T  11879898 gttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaa 11879950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 11897314 - 11897366
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||| |||||| ||||||||||| |||||| |||||| |||||||||||||||    
T  11897314 gttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaa 11897366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 7489108 - 7489062
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||| ||||||||| || |||||||||| |||||||||||    
T  7489108 attttgctatttcctttcgacttgaagtaaagtcctgattttgacaa 7489062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 24414112 - 24414066
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||||| || |||||||| || ||||||||||    
T  24414112 attttgctattccctttcgacatgaagtaaagttccaattttgacaa 24414066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 40541646 - 40541602
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||| | ||||||||| || |||||||||||||||||||    
T  40541646 gattttgctacttcctttcgacttgaagtaaagtcccgattttga 40541602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 7223818 - 7223865
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7223818 gattttgctattccctttcgacctgaagtaaagtcccgattttgacaa 7223865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 3573728 - 3573678
Alignment:
Q  8 ctgattttgctattcccttt-cgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  3573728 ctgattttgctattcccttttcgacctgaagtaaagtcccgattttgacaa 3573678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 22498265 - 22498219
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  22498265 attttgctattccctttcgacctgaagtaaagtcccaattttgacaa 22498219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 31108458 - 31108504
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgaca 56  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  31108458 gattttgctattccctttcgacctgaagtaaagtcctgattttgaca 31108504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 7918178 - 7918129
Alignment:
Q  8 ctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  7918178 ctgattctgctattccctttcgacctgaagtaaagccccgattttgacaa 7918129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 17103496 - 17103545
Alignment:
Q  8 ctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  17103496 ctgattttgttattccctttcgacttgaagtaaagtcccgattttgacaa 17103545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 11327388 - 11327341
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  11327388 gattttgctattccctttcaacctgaagtaaagccccgattttgacaa 11327341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 19748636 - 19748683
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  19748636 gattttgctattccctttcaacctgaattaaagtcccgattttgacaa 19748683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 26053121 - 26053075
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||    
T  26053121 attttgctatttcctttcgacctgaagtaaagtcctgattttgacaa 26053075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 26073174 - 26073128
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||    
T  26073174 attttgctatttcctttcgacctgaagtaaagtcctgattttgacaa 26073128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 17543556 - 17543509
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||| |||||||||| ||||||||||| ||||| ||||    
T  17543556 gattttgctattccttttcgacctgaagtaaagtcccaattttaacaa 17543509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 15527941 - 15527892
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||| |||||||||||| |||||||||||| |||||||||  ||||||||    
T  15527941 gttccgattttgctatttcctttcgacctgaagtaaagtcaggattttga 15527892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 21846100 - 21846053
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21846100 gattttgctattccctttcgacctggagtaaagtcctgattttgacaa 21846053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 9954827 - 9954775
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  9954827 gttccgattttgctattccctttcgaccttaagtaaagtcccgattttgacaa 9954775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 39783865 - 39783959
Alignment:
Q  120 tatttatttagatggaaattgtcccgatcagattgcgaatagcagttaaccaattacctcttt-----gcctgcccacaaaacaaggaaggtggtg 210  Q
    ||||||||||||||||||||||| |||| |||||| |||||| | ||| ||||||||||||||     | ||| ||||||||||||||||||||||    
T  39783865 tatttatttagatggaaattgtctcgattagattgtgaatagaa-ttagccaattacctctttaatttgtctggccacaaaacaaggaaggtggtg 39783959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 14074308 - 14074262
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||    
T  14074308 attttgctattccctttcgacctgaagtaaagtcctgattttgacaa 14074262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 13100488 - 13100540
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||| |||||||| ||||||||||||| || ||||||||||||||||||||||    
T  13100488 gttccgattttgccattccctttcgacttgaagtaaagtcccgattttgacaa 13100540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 15382159 - 15382262
Alignment:
Q  111 gagcactgttatttatttagatggaaattgtcccgatcagattgcgaatagcagttaaccaattacctctttgcctgcccacaaaacaaggaaggtggtg 210  Q
    |||||||| ||||||| |||||  ||||| |||||||   |  ||||||| || ||||||||| |||||| |||||| |||||||||||| ||| |||||    
T  15382159 gagcactgctatttatctagataaaaattatcccgatggtacagcgaataacacttaaccaatcacctctatgcctggccacaaaacaagtaagatggtg 15382258  T
Q  211 ctat 214  Q
    ||||    
T  15382259 ctat 15382262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 25146594 - 25146547
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  25146594 gattttgctattccctttcaacctgaagtaaagtcctgattttgacaa 25146547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 13276084 - 13276036
Alignment:
Q  8 ctgattttgctattccctttcgacctggagtaaagtcccgattttgacaatc 59  Q
    ||||||||||||||| |||||||||   ||||||||||||||||||||||||    
T  13276084 ctgattttgctattctctttcgacc---agtaaagtcccgattttgacaatc 13276036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 17197360 - 17197311
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||| |||||||||| ||||||||||| || |||||||||||||||||||    
T  17197360 gttccgattttgctactccctttcgacttgaagtaaagtcccgattttga 17197311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 9351889 - 9351842
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||| ||||||||||| |||||||||  |||||||||||    
T  9351889 gattttgctattcgctttcgacctgaagtaaagtcttgattttgacaa 9351842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 9954859 - 9954816
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttg 53  Q
    ||||||||||||||||||||||||  |||||||| |||||||||    
T  9954859 gattttgctattccctttcgaccttaagtaaagttccgattttg 9954816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 18304644 - 18304597
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||| || |||||||||||| ||| ||||||||||||||||||    
T  18304644 gattttgctttttcctttcgacctgaagtgaagtcccgattttgacaa 18304597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 16125280 - 16125234
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||| |||||||||||||||||| |||||||| |||||||| ||||    
T  16125280 attttactattccctttcgacctgaagtaaagttccgattttaacaa 16125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 16434812 - 16434861
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaatc 59  Q
    |||||||||||||||||| ||||| ||| ||| ||| |||||||||||||    
T  16434812 gattttgctattcccttttgacctagagaaaaatcctgattttgacaatc 16434861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 17869576 - 17869527
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaatc 59  Q
    ||||||||| |||||||| |||||| | || |||||||||||||||||||    
T  17869576 gattttgctcttcccttttgacctgaattagagtcccgattttgacaatc 17869527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 56251 - 56204
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  56251 gattttgctattccctttcgacctgaagtaaagtctcgattttgacaa 56204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 17811651 - 17811698
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  17811651 gattttgctattcccttttgacctgaagtaaagtcccgattttgacaa 17811698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 5058831 - 5058878
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||    
T  5058831 gattttgctattcccttttgatctgaagtaaagtcccgattttgacaa 5058878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 24989600 - 24989553
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  24989600 gattttgttattccctttcgacctaaagtaaagtcccgattttgacaa 24989553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 44944668 - 44944624
Alignment:
Q  13 tttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||||    
T  44944668 tttgctatttcctttcgatctgaagtaaagtcccgattttgacaa 44944624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 20570710 - 20570664
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||| ||||||||||| ||||| |||| |||||||||||||||||    
T  20570710 attttgttattccctttcaacctgaagtagagtcccgattttgacaa 20570664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4247667 - 4247708
Alignment:
Q  18 tattccctttcgacctggagtaaagtcccgattttgacaatc 59  Q
    |||||||||||||| || ||||||||||| ||||||||||||    
T  4247667 tattccctttcgacttgaagtaaagtcccaattttgacaatc 4247708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 10285730 - 10285682
Alignment:
Q  9 tgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||| || ||| ||||||||||| |||||| |||||||||||||||    
T  10285730 tgatttttctcttctctttcgacctgaagtaaaatcccgattttgacaa 10285682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 25842557 - 25842513
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||| ||||||||||| || ||||||||||| |||||||    
T  25842557 gattttgctactccctttcgacttgaagtaaagtcccaattttga 25842513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 26281213 - 26281169
Alignment:
Q  13 tttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||| |||||||||  |||||||||| |||||||||||    
T  26281213 tttgctattccttttcgacctaaagtaaagtcctgattttgacaa 26281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 6852392 - 6852345
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  6852392 gattttgctattccctttcgacctgaagtgaagtcccgattttgacaa 6852345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 18844018 - 18844065
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18844018 gattttgctattccctttcgacctgaagtaaagttccgattttgacaa 18844065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 41688492 - 41688445
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||    
T  41688492 gattttgctattccctttcgtcctaaagtaaagtcccgattttgacaa 41688445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 23172267 - 23172223
Alignment:
Q  13 tttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||    
T  23172267 tttgctattccctttcaacctgaagtaaagttccgattttgacaa 23172223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 27340013 - 27339966
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||| || || |||||||| |||||||||||||    
T  27340013 gattttgctattccctttcaacttgaagtaaagttccgattttgacaa 27339966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 18051359 - 18051314
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgac 55  Q
    |||||| |||||||||||||||||  |||||| |||||||||||||    
T  18051359 gatttttctattccctttcgacctaaagtaaaatcccgattttgac 18051314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 43235169 - 43235218
Alignment:
Q  8 ctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||||| |  | ||||||||||| ||||||||||    
T  43235169 ctgattttgctattccctttcgtctcgaagtaaagtcccaattttgacaa 43235218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15051923 - 15051879
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||| ||| ||||||| || |||||||||||||||||||    
T  15051923 gattttgctactccttttcgacttgaagtaaagtcccgattttga 15051879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 9770415 - 9770462
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  9770415 gattttgctattccctttcgacctaaagtaaagtcccgattttgacaa 9770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 23064792 - 23064740
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||| ||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  23064792 gttccgatttcgttattccctttcgacctgaagtaaagtcccgattttgacaa 23064740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 7045246 - 7045294
Alignment:
Q  9 tgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||| ||||||||||||||| |||||| | || ||||||||||    
T  7045246 tgattttgctcttccctttcgacctgaagtaaaattcctattttgacaa 7045294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 24649574 - 24649528
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  24649574 attttgctattccctttcgacctgaagtaaagtcccaattttgacaa 24649528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 29067574 - 29067626
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||| ||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  29067574 gttccgattttgctattcccattcgacctgaagtaaagttccgattttgacaa 29067626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 25296659 - 25296557
Alignment:
Q  111 gagcactgttatttatttagatggaaattgtcccgatcagattgcgaatagcagttaaccaattacctctttgcctgcccacaaaacaaggaaggtggtg 210  Q
    ||||| || ||||||| ||||||||||||||| |||||| | || ||||| || ||||||||| |||| | || ||| ||||| ||||| ||||||||||    
T  25296659 gagcagtgctatttatctagatggaaattgtctcgatcatactgtgaataacaattaaccaatcacctttctgtctggccacacaacaa-gaaggtggtg 25296561  T
Q  211 ctat 214  Q
    ||||    
T  25296560 ctat 25296557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 8592225 - 8592178
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||| ||||||||| || |||||||||||||||| |||||    
T  8592225 gattttgctatttcctttcgacttgaagtaaagtcccgatttcgacaa 8592178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 28746079 - 28746126
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||  ||||||||||| ||||||||||| ||||||||||    
T  28746079 gattttgctattttctttcgacctgaagtaaagtcccaattttgacaa 28746126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 39428210 - 39428257
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||| |||   ||||||||||||||||||||||    
T  39428210 gattttgctattccctttcaaccgcaagtaaagtcccgattttgacaa 39428257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 24620022 - 24619976
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||| ||| || |||||||| |||||||||||||    
T  24620022 attttgctattcccttttgacttgaagtaaagttccgattttgacaa 24619976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 6861038 - 6860990
Alignment:
Q  9 tgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||| |||||||||||||||||| || ||| |||| ||||||||||    
T  6861038 tgattttactattccctttcgacctgaagcaaaatcccaattttgacaa 6860990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 8560283 - 8560239
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||| ||||||| ||| || |||||||||||||||||||    
T  8560283 gattttgctactcccttttgacttgaagtaaagtcccgattttga 8560239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 13006129 - 13006176
Alignment:
Q  11 attttgctattccctttcgacctggagtaaagtcccgattttgacaatc 59  Q
    |||||||||||||||||||||||  || ||| |||||||||||||||||    
T  13006129 attttgctattccctttcgacctaaagcaaa-tcccgattttgacaatc 13006176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 22355892 - 22355848
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||||||| ||||||||||  ||||||| ||||||||||    
T  22355892 gattttgctattccatttcgacctgatgtaaagttccgattttga 22355848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 8739 - 8788
Alignment:
Q  5 gttctgattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||    
T  8739 gttccgattttgttattccctttcgacctgaagtaaagtcccgattttga 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 38353 - 38306
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||| ||||||||| || ||||||||||||||||||||||    
T  38353 gattttgctatttcctttcgacttgaagtaaagtcccgattttgacaa 38306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 20064026 - 20064073
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  20064026 gattttgctattccctttcaacctgaagtaaagccccgattttgacaa 20064073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 21869147 - 21869102
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgac 55  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||    
T  21869147 gatttttctattccctttcgacttgaagtaaagtcccgattttgac 21869102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 20034048 - 20034004
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||| ||||||||||| || |||||||||||||||||||    
T  20034048 gattttgctactccctttcgacttgaagtaaagtcccgattttga 20034004  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 25538971 - 25538924
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||| ||||||||||||||||||  ||||||| |||||||||||||    
T  25538971 gatttttctattccctttcgacctgatgtaaagtaccgattttgacaa 25538924  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 27523922 - 27523881
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattt 51  Q
    |||||||||| ||||||||||| || ||||||||||||||||    
T  27523922 gattttgctactccctttcgacttgaagtaaagtcccgattt 27523881  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 31237802 - 31237753
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttgacaatc 59  Q
    |||||| ||||||||||| || ||| |||||||||| |||||||||||||    
T  31237802 gattttactattcccttttgaactgaagtaaagtcctgattttgacaatc 31237753  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 974642 - 974686
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||| ||||||||||| || |||||||||||||| ||||    
T  974642 gattttgctactccctttcgacttgaagtaaagtcccgatattga 974686  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 8428524 - 8428572
Alignment:
Q  9 tgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||| |||||||||||||||||  || ||| |||||||||||||||    
T  8428524 tgatttttctattccctttcgacctaaagcaaaatcccgattttgacaa 8428572  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 19245891 - 19245939
Alignment:
Q  9 tgattttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    |||||||||||||||||||| || || || ||| |||||||||||||||    
T  19245891 tgattttgctattccctttcaacttgaagcaaaatcccgattttgacaa 19245939  T

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Target: scaffold2084 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 131 - 175
Alignment:
Q  10 gattttgctattccctttcgacctggagtaaagtcccgattttga 54  Q
    |||||||||| ||||||| ||| || |||||||||||||||||||    
T  131 gattttgctactcccttttgacttgaagtaaagtcccgattttga 175  T

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Target: scaffold0061 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 76132 - 76088
Alignment:
Q  13 tttgctattccctttcgacctggagtaaagtcccgattttgacaa 57  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||    
T  76132 tttgctatttcctttcgactggaagtaaagtcccgattttgacaa 76088  T

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